PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04678

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 349aa MW: 39329.4 Da PI: 6.2319

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04678	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73.2	3.4e-23	146	206	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg +WrKYGqKe+ ++++pr+Y+rCt + gC+++k+v++ ++ pk+ itY g+H+++ Ro07_G04678 146 DDGQAWRKYGQKEILNAPYPRAYFRCTRKydqGCQATKQVQQFQDTPKLYRITYIGKHTCR 206 8************************998899************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MATTWLEALP TGHKRVIIKE LVHGRKRATE LQTLLNNRGD GSSPLSPEEL VKEILTSFTD 60 SLSVLTDHSK SCGDDDHQYS GTGCGEVYPY GEVKAEPSHV DHSHCDDRSY EDSGESRKRP 120 GCKDRRGCYK RRKNSESWIV VSPTIDDGQA WRKYGQKEIL NAPYPRAYFR CTRKYDQGCQ 180 ATKQVQQFQD TPKLYRITYI GKHTCRNIVK GPQMIMGTSG ESHGPQATTV SSESGSTPIY 240 NHGDHGGRLS SSMIPSTLVK KEEYKEGNTS SDLTDNHNDT SDVWPDFKDH HRHDFGFTET 300 TTALSNEDVV SNMQYLDMDL VKSIDFESDF PFDEVAFPLG PFEWARIAT

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MATTWLEALP TGHKRVIIKE LVHGRKRATE LQTLLNNRGD GSSPLSPEEL VKEILTSFTD  60
SLSVLTDHSK SCGDDDHQYS GTGCGEVYPY GEVKAEPSHV DHSHCDDRSY EDSGESRKRP  120
GCKDRRGCYK RRKNSESWIV VSPTIDDGQA WRKYGQKEIL NAPYPRAYFR CTRKYDQGCQ  180
ATKQVQQFQD TPKLYRITYI GKHTCRNIVK GPQMIMGTSG ESHGPQATTV SSESGSTPIY  240
NHGDHGGRLS SSMIPSTLVK KEEYKEGNTS SDLTDNHNDT SDVWPDFKDH HRHDFGFTET  300
TTALSNEDVV SNMQYLDMDL VKSIDFESDF PFDEVAFPLG PFEWARIAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	133	RKRPGCKDRRGCYKRRK
2	130	157	KRRKNSESWIVVSPTIDDGQAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	5e-47	WRKY family protein