PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04300

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

BES1

Protein Properties

Length: 1163aa MW: 130874 Da PI: 5.8548

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04300	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	139.1	4.4e-43	552	682	7	131
DUF822 7 ptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasaspesslqssl 98 ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtty+ +g +p ++a + ss+ +s+ ++++++ Ro07_G04300 552 QPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTYPsnsQGPRPAvvnSTAVTSSSSQMVSQPTPMSLKG 649 6789*********************************************************96555556666433333333344466777777788 PP DUF822 99 kssalaspvesysaspksssfpspssldsisla 131 ++s +s ve+ ++ ks+ +p +s +d s++ Ro07_G04300 650 VTSGYQSSVEHNACHIKSVFMPGSSPYDLPSIN 682 8999*******************99988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
MALSSFQVFN CLMPRPPSAS LSSSSQTLVA SLRVSPGFWG SPEFSSCRLR VLGSSRYRTS 60 AVVSAEGTEV GDSVENVGDE QVEESAQKIQ ERDFTGTPYV PIYVMLPLGV INMNSELVEP 120 EVLMDQLRVL KSVGVDGVMV DCWWGIVEAH SPQGYNWSGY KKLFQIVRDL NLKLQVVMSF 180 HECGGNVGDD VHIPLPHWVT EIGQKNPDIY FTNREGKRNA ECLTWGIDKE RVLKGRTGVE 240 VYFDYMRSFR VEFDEFFAEG IISEIEVGLG PCGELRYPSY PAQHGWKYPG IGEFQCYDRY 300 LMENLKKAAE ARGHSFWARG PDNAGSYNSQ PQETGFFRDG GDYDSYYGRF FLNWYSHVLV 360 DHGDRVLSLA NLAFEGTCIA AKLSGIHWWY KTASHAAELT AGFYNPCNRD GYAPIAAMFK 420 KHAAALNFTC VELRTSDQHE DFPEAMADPE GLVWQVLNAA WDANIPVASE NALNCHDREG 480 YNKILENAKP LNDPDGRHLS AFTYLRLSPV LMERHNFMEF ERFVKKMHGE AAPDLQINLN 540 EEHTEDSSAN PQPLEEKERT KLRERQRRAI TAKILAGLRR HGNYNLRVRA DINDVIAALA 600 REAGWVVLPD GTTYPSNSQG PRPAVVNSTA VTSSSSQMVS QPTPMSLKGV TSGYQSSVEH 660 NACHIKSVFM PGSSPYDLPS INTGDGGDQT ESHPLIGDSM DNVGDKQIVD MPQKLPERDF 720 ANTAYIPVFV MLPLGVINMK CELVDPDGLL KQLRVLKSVN VDGVTVDCWW GIVEGHAPLE 780 YNWNGYRRLF QMVRDLKLKL QVVMSFHECG GNVGDDVCIT LPHWVAEIGR SNPDIFFTDR 840 AGRRNPECLS WGIDKERVLR GRTAVEVYFD CMRSFRVEFD EFFQDGIISM IQVGLGPCGE 900 LRFPSCTVKH GWRYPGIGEF QCYDQYLLKS LRKAAEARGH SFWDRGPDNA GSYNSRPHES 960 GFFCDGGDYD GYYGRFFLNW YSRVLVDHGD RVLSLAKLAF DGTCIAAKLS GIHWWYKTLS 1020 HAAELTAGFY NPCNRDGYAA IVTMLKKHGA SLNLVCTQLH MLDQHIDFQE ALGDPEGLFW 1080 QVLNAAWDVC VPVSSENALL CHDRVGYNKI LDNSKPLTDP DGRHLSSFTY LRLGPLLMER 1140 HNFMEFDRFV KRMHGEAVLD LHV

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

MALSSFQVFN CLMPRPPSAS LSSSSQTLVA SLRVSPGFWG SPEFSSCRLR VLGSSRYRTS  60
AVVSAEGTEV GDSVENVGDE QVEESAQKIQ ERDFTGTPYV PIYVMLPLGV INMNSELVEP  120
EVLMDQLRVL KSVGVDGVMV DCWWGIVEAH SPQGYNWSGY KKLFQIVRDL NLKLQVVMSF  180
HECGGNVGDD VHIPLPHWVT EIGQKNPDIY FTNREGKRNA ECLTWGIDKE RVLKGRTGVE  240
VYFDYMRSFR VEFDEFFAEG IISEIEVGLG PCGELRYPSY PAQHGWKYPG IGEFQCYDRY  300
LMENLKKAAE ARGHSFWARG PDNAGSYNSQ PQETGFFRDG GDYDSYYGRF FLNWYSHVLV  360
DHGDRVLSLA NLAFEGTCIA AKLSGIHWWY KTASHAAELT AGFYNPCNRD GYAPIAAMFK  420
KHAAALNFTC VELRTSDQHE DFPEAMADPE GLVWQVLNAA WDANIPVASE NALNCHDREG  480
YNKILENAKP LNDPDGRHLS AFTYLRLSPV LMERHNFMEF ERFVKKMHGE AAPDLQINLN  540
EEHTEDSSAN PQPLEEKERT KLRERQRRAI TAKILAGLRR HGNYNLRVRA DINDVIAALA  600
REAGWVVLPD GTTYPSNSQG PRPAVVNSTA VTSSSSQMVS QPTPMSLKGV TSGYQSSVEH  660
NACHIKSVFM PGSSPYDLPS INTGDGGDQT ESHPLIGDSM DNVGDKQIVD MPQKLPERDF  720
ANTAYIPVFV MLPLGVINMK CELVDPDGLL KQLRVLKSVN VDGVTVDCWW GIVEGHAPLE  780
YNWNGYRRLF QMVRDLKLKL QVVMSFHECG GNVGDDVCIT LPHWVAEIGR SNPDIFFTDR  840
AGRRNPECLS WGIDKERVLR GRTAVEVYFD CMRSFRVEFD EFFQDGIISM IQVGLGPCGE  900
LRFPSCTVKH GWRYPGIGEF QCYDQYLLKS LRKAAEARGH SFWDRGPDNA GSYNSRPHES  960
GFFCDGGDYD GYYGRFFLNW YSRVLVDHGD RVLSLAKLAF DGTCIAAKLS GIHWWYKTLS  1020
HAAELTAGFY NPCNRDGYAA IVTMLKKHGA SLNLVCTQLH MLDQHIDFQE ALGDPEGLFW  1080
QVLNAAWDVC VPVSSENALL CHDRVGYNKI LDNSKPLTDP DGRHLSSFTY LRLGPLLMER  1140
HNFMEFDRFV KRMHGEAVLD LHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	BES1 family protein