PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G01993

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 368aa MW: 41578.2 Da PI: 8.9578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G01993	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.6e-07	210	229	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Ro07_G01993 210 FSCPVCSKTFKRYNNLQMHM 229 89*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MNLIPWPHHR SSFFLPSILS VSESQLHDMM TDPNNSFCNG WINFIPLHPA HPHYSSYSSN 60 PSFNSNIPPH NLTVKKSSII QSQPLNDYHL NPSSISHPSP PLEEALPLIN KLRPRGGQLE 120 EHVHKPSSST STNAMEEDNK DDDDDGGDLT HVALQIGLPC SPPINPPGLR VDQSTYPSAD 180 GVKDLPVDRL SKCHYWIPTP SQILIGPTQF SCPVCSKTFK RYNNLQMHMW GHGSQYRKGP 240 DSLKGNQPTA MLRLPCYCCA QGCKHNIDHP RAKPLKDFKT LRTHYKRKHG IRPFICKRCG 300 KSLAVKGDWR THEKNCGKVW YCICGSDFKH KRSLKDHIKA FGQGHGAFDV ECNIRNIYRA 360 YKSIYDAS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MNLIPWPHHR SSFFLPSILS VSESQLHDMM TDPNNSFCNG WINFIPLHPA HPHYSSYSSN  60
PSFNSNIPPH NLTVKKSSII QSQPLNDYHL NPSSISHPSP PLEEALPLIN KLRPRGGQLE  120
EHVHKPSSST STNAMEEDNK DDDDDGGDLT HVALQIGLPC SPPINPPGLR VDQSTYPSAD  180
GVKDLPVDRL SKCHYWIPTP SQILIGPTQF SCPVCSKTFK RYNNLQMHMW GHGSQYRKGP  240
DSLKGNQPTA MLRLPCYCCA QGCKHNIDHP RAKPLKDFKT LRTHYKRKHG IRPFICKRCG  300
KSLAVKGDWR THEKNCGKVW YCICGSDFKH KRSLKDHIKA FGQGHGAFDV ECNIRNIYRA  360
YKSIYDAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-105	C2H2 family protein