PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G29434
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 605aa    MW: 68283.5 Da    PI: 8.9593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G29434genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.58e-1280129756
                  --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +  + +++L+e+  kn+yp+ +++ee+A++l L+ +q+++W qN R+k++
  Ro06_G29434  80 YDGYTIQQLKEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNYRTKRR 129
                  556778999999999*********************************98 PP
2START105.96.5e-3418133850206
                  EEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS- CS
        START  50 asgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkp 136
                  ++++v m++ + v++l+d+k qW++++     ka tlev+  g      +al+ + ae+ ++splvp R+  fvRy+rq  ++ wv+vd ++  e + 
  Ro06_G29434 181 EKAMVLMDPINIVKILMDVK-QWSTMFGnivsKARTLEVLAVGdnknfnEALHEIIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLKEIF- 275
                  578999**************.******99***********99999********************************************.4444444. PP

                  -.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 137 pesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    + s++++ ++pSg+li+ +++g+skvtwve+++  + +     r  +ksg+a+g+k+wv+tl+rqce+
  Ro06_G29434 276 --QDSLAKCYRRPSGCLIQALPDGYSKVTWVENAEIMKMS-----RTCIKSGAAFGVKRWVSTLERQCER 338
                  ..5589*****************************87654.....8**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    
MSKQVRSFDE LMQPSNFDYE GWLGELPRGT VKNCDMPKKK QLQISSWISL SDPRSPEEDL  60
DPSSGSDMGP SRLKFKKGKY DGYTIQQLKE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNYRTKRRA EFFRSENDAL KKEGYEQAFT NTTCLVCGGP RITTKGLDYR PQVLDAGPNI  180
EKAMVLMDPI NIVKILMDVK QWSTMFGNIV SKARTLEVLA VGDNKNFNEA LHEIIAEFHL  240
PSPLVPVREH HFVRYCRQYY EDLWVVVDAD LKEIFQDSLA KCYRRPSGCL IQALPDGYSK  300
VTWVENAEIM KMSRTCIKSG AAFGVKRWVS TLERQCERLV SSMATTHDPI SLGVIYDDKG  360
KRGLYNLARR MMLKFHSDIS ASAANQWSTS LECPGSDEIQ SMVKVIMEDP GVPKGTIFST  420
VSSLWRLTSP RDVFEFLQNL QTQHPWDILA KGEVVEEIMR IITSPNPGNY ISMLRIDGAN  480
SGTSKRLILQ ESCANSIESY LVYTKINFFE MKAVLNGANP DSVALLPSGF AIIPNVAATK  540
GVGVSHGTNT DGTVLTIAIQ KVVHLGRNLK NFNKPLIEAK KRIRAIITGI TRAALKDHQQ  600
LAGLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1579585AKKRIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-119HD-ZIP family protein