PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G29363

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 619aa MW: 70031.2 Da PI: 8.7725

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G29363	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.3	1.3e-13	75	129	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k++++ ++ +++Lee+ kn+yp+ +++ee+A++l L+ +q+++W qN+R+k++ Ro06_G29363 75 SKKRKYDDYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTKRR 129 678899*********9*********************************98 PP
2	START	123.6	2.5e-39	190	352	50	206
EEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS- CS START 50 asgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkp 136 ++++v m++ + v++l+d+k qW++++ +a tlev+ g +al+ + ae+ ++splvp R+ fvRy+rq ++ wv+vd ++ e + Ro06_G29363 190 EKAMVLMDPINIVKILMDVK-QWSTMFGniisRARTLEVLAVGdkenfnEALHEIIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLKEIF- 284 578999************.**99********999*****************************************.4444444. PP -.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 137 pesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + s+v++ ++pSg+li+ +++g+skvtwve+++++ +++l+ +l++sg+a+gak+wv+tl+rqce+ Ro06_G29363 285 --QDSLVKCYRRPSGCLIQALPDGYSKVTWVENAEVDNEDVQNLYLPLIRSGAAFGAKRWVSTLERQCER 352 ..568*************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL 60 DPSSGSDISP SRFKSKKRKY DDYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW 120 IQNHRTKRRA EFFRSENDAL KKEVSKLHVK LKGYEQAFAN TTCLVCGGPR ITTKGLDYRP 180 QVLDAGPNIE KAMVLMDPIN IVKILMDVKQ WSTMFGNIIS RARTLEVLAV GDKENFNEAL 240 HEIIAEFHLP SPLVPVREHH FVRYCRQYYE DLWVVVDADL KEIFQDSLVK CYRRPSGCLI 300 QALPDGYSKV TWVENAEVDN EDVQNLYLPL IRSGAAFGAK RWVSTLERQC ERLVSSMATS 360 PDPISLGVIY DDKGKRGLYN LARRMMLKFH SDISASAANQ WSTSLECPGS DEIQSMVKVN 420 MEDPGVPKGT IFSTVSSLWR LTSPRDVFEF LQNLQTQHPW DILAKGEVVE EVMRIITSPN 480 PGNYISMLRI DGANSGTSKR LILQESCVNS IESYLVHTKI NFFEMKAVLN RANPNSVALL 540 PSGFAIIPNV AATKGVGGSH GTNTDGTVLT IVIQKVVHLG RNLKKFNKPL TEAKKRIRAI 600 IAGITRVALK DHQQLAGLY

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DDYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTKRRA EFFRSENDAL KKEVSKLHVK LKGYEQAFAN TTCLVCGGPR ITTKGLDYRP  180
QVLDAGPNIE KAMVLMDPIN IVKILMDVKQ WSTMFGNIIS RARTLEVLAV GDKENFNEAL  240
HEIIAEFHLP SPLVPVREHH FVRYCRQYYE DLWVVVDADL KEIFQDSLVK CYRRPSGCLI  300
QALPDGYSKV TWVENAEVDN EDVQNLYLPL IRSGAAFGAK RWVSTLERQC ERLVSSMATS  360
PDPISLGVIY DDKGKRGLYN LARRMMLKFH SDISASAANQ WSTSLECPGS DEIQSMVKVN  420
MEDPGVPKGT IFSTVSSLWR LTSPRDVFEF LQNLQTQHPW DILAKGEVVE EVMRIITSPN  480
PGNYISMLRI DGANSGTSKR LILQESCVNS IESYLVHTKI NFFEMKAVLN RANPNSVALL  540
PSGFAIIPNV AATKGVGGSH GTNTDGTVLT IVIQKVVHLG RNLKKFNKPL TEAKKRIRAI  600
IAGITRVALK DHQQLAGLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	593	599	AKKRIRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-126	HD-ZIP family protein