PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 306aa    MW: 33939.9 Da    PI: 9.3944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28795genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.38.6e-152593011859
                  -SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  18 sefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +   r+YY+C+s  gCp++k+ve++ edp+++++tYe+eH+h+
  Ro06_G28795 259 NSKKRGYYKCSSMrGCPARKHVEKCVEDPSMLIVTYESEHKHS 301
                  6678******9988****************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEIIICLSRL VFGALGNMEE VEAANKAAVE SCHRVLNSLL CKPKDEIQCR NLGVQTEEAV  60
LKLKRVVSLL SHRRIRKLNK KLDSSLPQSI FLDGPNYRSD ISSKPLQLLP PTSLENPPTQ  120
NQKVFLGNPV MDMSIKLPLQ IAKPQPLQQL RRVEVQPQQF NCEADMMWSR RNSSGINLAF  180
DKSSTTPAMS SAASFISCLS MDGGGAANFQ GSSFQLIGGA PRMSESISQQ QQQQQQRRKC  240
TSAEGNSSVK CGSSDKCHNS KKRGYYKCSS MRGCPARKHV EKCVEDPSML IVTYESEHKH  300
SQSAHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.19e-34WRKY family protein