PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G28795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 33939.9 Da PI: 9.3944 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 46.3 | 8.6e-15 | 259 | 301 | 18 | 59 |
-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 18 sefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 + r+YY+C+s gCp++k+ve++ edp+++++tYe+eH+h+ Ro06_G28795 259 NSKKRGYYKCSSMrGCPARKHVEKCVEDPSMLIVTYESEHKHS 301 6678******9988****************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MEIIICLSRL VFGALGNMEE VEAANKAAVE SCHRVLNSLL CKPKDEIQCR NLGVQTEEAV 60 LKLKRVVSLL SHRRIRKLNK KLDSSLPQSI FLDGPNYRSD ISSKPLQLLP PTSLENPPTQ 120 NQKVFLGNPV MDMSIKLPLQ IAKPQPLQQL RRVEVQPQQF NCEADMMWSR RNSSGINLAF 180 DKSSTTPAMS SAASFISCLS MDGGGAANFQ GSSFQLIGGA PRMSESISQQ QQQQQQRRKC 240 TSAEGNSSVK CGSSDKCHNS KKRGYYKCSS MRGCPARKHV EKCVEDPSML IVTYESEHKH 300 SQSAHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 9e-34 | WRKY family protein |