PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G28717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 534aa MW: 58260.5 Da PI: 8.3572 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.5e-32 | 240 | 296 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers ++++ei+Y+g+Hnh+ Ro06_G28717 240 DDRYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-TGEITEIIYKGKHNHD 296 8****************************************.9**************7 PP | |||||||
2 | WRKY | 106.7 | 1.2e-33 | 419 | 477 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a+dpk+v++tYeg+Hnh+ Ro06_G28717 419 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHVERAATDPKAVITTYEGKHNHD 477 59********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence |
MAAKHQDSIS APQPQRPVIT LPPRPSAEAL FSGGSGASPG PMTLVSSFFS DSCPDSEFRS 60 FSQLLAGAMG SPLGQSRPIM FGENQNPVGT SAKEGGSENG GDKNSGFKQS RPMNLMVTHS 120 PLFTVPPGMS PSGLLNSPAG FFAPPSPFGI SHQQALAHVT AQAALAQSNM QMQAEYQSSL 180 LAAPTESQTN NPSSIPNEAS QQQTAPSTSE LRSSMVQSSE ASHSDSKYHP SSHATDKPAD 240 DRYNWRKYGQ KQVKGSEYPR SYYKCTHLNC PVKKKVERSP TGEITEIIYK GKHNHDPPQP 300 NKRAKDGGGQ NGLIDSQPKL ENGLHRRVGD SNRSSEAVPE RDHEYTQAAP VQLPSDSEDL 360 GDGETREEGD ADEPNPKRRH FSNLYCRNID GISSEVALPH KTVTEPKIIV QTRSEVDLLD 420 DGYRWRKYGQ KVVKGNPHPR SYYKCTYAGC NVRKHVERAA TDPKAVITTY EGKHNHDVPA 480 ARNSSHNIAN NNASQFKPPT VVAAEKHPLL KGREFGNNDQ RPVVLQLKEE QITV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-127 | WRKY family protein |