PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G28654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28239.4 Da PI: 10.6571 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 5.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Ro06_G28654 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 100.2 | 3e-33 | 72 | 163 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l ++ es++ e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn+l++e+i+e+qkk k lqe+n++L+kkl+e Ro06_G28654 72 LMQKGRESWSMEYPKLAARIEILQRKIRNYTGEDLDPLSLRELQSLEQQIDTALKRVRTRKNQLMHESISEMQKKHKTLQEQNNSLTKKLKE 163 5677789**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SRGSWSDMNN ILMQKGRESW SMEYPKLAAR IEILQRKIRN YTGEDLDPLS LRELQSLEQQ 120 IDTALKRVRT RKNQLMHESI SEMQKKHKTL QEQNNSLTKK LKENEKVRQA EPNNQQPNAS 180 TLMLMPPLRP PSQPSPPTLL SSLTIGGAVQ GRREAMDEDG EDHQGRAQTR PTTNTLMPPW 240 MVRHLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 9e-67 | MIKC_MADS family protein |