PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28552

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 287aa MW: 31776.7 Da PI: 4.1773

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28552	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.6e-28	64	114	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWtp LH++Fv+a++qLGG++kAtPk+i+++m+vkg+tl h+kSHLQ Ro06_G28552 64 KTRLRWTPHLHASFVDAINQLGGPHKATPKSIMRIMDVKGITLFHLKSHLQ 114 68************************************************* PP
2	Myb_DNA-binding	46.2	1.1e-14	66	114	1	45
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwq 45 r+rWT+ ++ +vda++qlGg+ t+k+I+r m kg tl ++ks++q Ro06_G28552 66 RLRWTPHLHASFVDAINQLGGPhkaTPKSIMRIMDvKGITLFHLKSHLQ 114 89*********************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MVGYDEEQDF QGPQTPTIDC GVVEGEEEEE EEEEEEDEEE ENSNDSTSQI EPATPFLVSG 60 SNLKTRLRWT PHLHASFVDA INQLGGPHKA TPKSIMRIMD VKGITLFHLK SHLQAEKHLQ 120 LRQNAERRYL SLALDNACEN LAHQFLGGLA ADFAGVFGHN ESGLETMGSI PHQLSFAHQL 180 GRFQPPREDY LATQDHLVSD GHSGNLFVEN FHICAEDQLG RIQPKIEAYF ATEDNLISDG 240 HSGNSSVEDF STLSADVTKE VESLDEDPAE AYLILDTTEI GSGNLKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-22	G2-like family protein