PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28234

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 361aa MW: 40304.5 Da PI: 8.6306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28234	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.4	3.2e-12	55	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Ro06_G28234 55 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEETAAHAYDLAALKYWG 111 57*****************99998898888888******************98 PP
2	AP2	51.2	3.1e-16	154	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Ro06_G28234 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 205 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MAKISQKKQK NTTSSSSNNS SSTTSTATTT SSPPATKVKR TRKSVRRDSP PQRSSIYRGV 60 TRHRWTGRYE AHLWDKNCWN ESQNKKGRQG AYDDEETAAH AYDLAALKYW GQDTILNFPV 120 STYEEELKEM EGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY 180 LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKS LCPNNQNVPN NTQPKPNVDL 240 SSIQEPDSKL GLGFKPHHPS SSASESMVAL PRSGNGSSAS SALGLLLQSP KFKEMLERTS 300 VSIDCSSTLS SEPDLPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGELNSF ASPVFHCELD 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MAKISQKKQK NTTSSSSNNS SSTTSTATTT SSPPATKVKR TRKSVRRDSP PQRSSIYRGV  60
TRHRWTGRYE AHLWDKNCWN ESQNKKGRQG AYDDEETAAH AYDLAALKYW GQDTILNFPV  120
STYEEELKEM EGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKS LCPNNQNVPN NTQPKPNVDL  240
SSIQEPDSKL GLGFKPHHPS SSASESMVAL PRSGNGSSAS SALGLLLQSP KFKEMLERTS  300
VSIDCSSTLS SEPDLPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGELNSF ASPVFHCELD  360
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-104	AP2 family protein