PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28194
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 678aa    MW: 76516.4 Da    PI: 8.7648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28194genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.3e-1375129256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +k++++  + +++Lee+  kn+yp+ +++ee+A++l L+ +q+++W qN+R++++
  Ro06_G28194  75 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTRRR 129
                  677899999*******999**********************************98 PP
2START1035.2e-332254115206
                  HHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEEEXXTT CS
        START   5 eaaqelvkkalaeepgWvkss..esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmvaelqa 100
                  +a++elv +++a++p+W +++    +n+ + l k ++s + + + +r ++ +  v+               +tl+  ++ ++ + ++al+ m ae+ +
  Ro06_G28194 225 AAMEELVMMVQAGAPLWISERhgGHPNQHDILNKKAQSYT-NNFLVRSFKRLSHVSK--------A-----RTLEVLAIGDKENFNEALHEMIAEFHL 308
                  6677777777777777777777766777777777766655.6666666655555555........2.....345555666677777************ PP

                  XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
        START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
                  +splvp R+  fvRy+rq  ++ wv+vd ++  e +   + s++++ ++pSg+li+ +++g skvtwve+++++   +++l+ +l++sg+a+gak+wv
  Ro06_G28194 309 PSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLKEIF---QDSLAKCYRRPSGCLIQALPDGNSKVTWVENAEVDNEDVQNLYLPLIRSGTAFGAKRWV 402
                  ****************************.4444444...5589******************************************************* PP

                  HHTXXXXXX CS
        START 198 atlqrqcek 206
                  +tl+rqce+
  Ro06_G28194 403 STLERQCER 411
                  *******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL  60
DPSSESDISP SRFKSKKRKY DGYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTRRRA EFFRSENDAL KKEVAKLHVK VKGYEQAFAN TTCLVCGGPR ITTKGLDYRP  180
QVLDAGPNIE KGKPTLDFPE AFQQARKDFL HTKDGKDLVA KLVFAAMEEL VMMVQAGAPL  240
WISERHGGHP NQHDILNKKA QSYTNNFLVR SFKRLSHVSK ARTLEVLAIG DKENFNEALH  300
EMIAEFHLPS PLVPVREHHF VRYCRQYYED LWVVVDADLK EIFQDSLAKC YRRPSGCLIQ  360
ALPDGNSKVT WVENAEVDNE DVQNLYLPLI RSGTAFGAKR WVSTLERQCE RLVSSMATSP  420
DPISLGVIYD DKGKRGLYNL ARRMMLKFHS DISASAANQW STSLACPGSD EIQSMVKVNM  480
EDPGVPNGII FSIVSSLWRL TSPRDIFEFL QNLQTQHPWD ILAKGEVVEE IMRIITSPNP  540
GNYISMLRID GANSGTSKRL ILQESCANSI ESYLVYTKIN FFEMKAVLNG ANPDSVALLP  600
SGFAIIPNVA ATKGVGGSHG TNIDGTLLTI AIQKVVHLGR NLKNFNKPLT EAKKRIRAII  660
AGITRAALKD HQQLAGLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1652658AKKRIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-142HD-ZIP family protein