PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G27358

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 381aa MW: 42350.4 Da PI: 6.7218

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G27358	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Ro06_G27358 14 RGLWSPEEDEKLIKYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	44.7	3e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+ +++ lG++ W+ Ia++++ gRt++++k++w+ Ro06_G27358 67 RGSFSSQEASLITQLHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLIKYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SSQEASLITQ LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLRPHE 120 VIPALAYFSN IHNPSSTGSD QESFSTTLIT NPNLCLYQQE EPNVHSLPTP LPLPSFYHGD 180 HNTLKLDHTN YSSNFFHFPS PVQLPSNYSS SYDFSWSFGY QPHQFDPNHQ HNQILNNIEI 240 APNFNTGNEL MVPSIASLPG YDHENLSVVP AMLQFCDNID DTSCISMPVG LSNDHPPQEL 300 DSLANLSSCF GPFGAHGSYN PCDVLLPSNQ LEFVDAIISS LPISSSSLSP SSASSSLSPL 360 PNTQLFIMNP NVHSSLGSLT S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLIKYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SSQEASLITQ LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLRPHE  120
VIPALAYFSN IHNPSSTGSD QESFSTTLIT NPNLCLYQQE EPNVHSLPTP LPLPSFYHGD  180
HNTLKLDHTN YSSNFFHFPS PVQLPSNYSS SYDFSWSFGY QPHQFDPNHQ HNQILNNIEI  240
APNFNTGNEL MVPSIASLPG YDHENLSVVP AMLQFCDNID DTSCISMPVG LSNDHPPQEL  300
DSLANLSSCF GPFGAHGSYN PCDVLLPSNQ LEFVDAIISS LPISSSSLSP SSASSSLSPL  360
PNTQLFIMNP NVHSSLGSLT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-78	MYB family protein