PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G26512

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 1759aa MW: 197979 Da PI: 5.292

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G26512	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.8	6.8e-17	10	66	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR +++qle+Le++++ ++yp ++ r+eL+ kl+L++rq ++WF+ rR k++k Ro06_G26512 10 RTKRKMKSASQLEVLEKAYAAEQYPLESVRAELSVKLDLSDRQLQMWFCHRRLKDRK 66 67999**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1759 aa Download sequence
MEAGQEGEIR TKRKMKSASQ LEVLEKAYAA EQYPLESVRA ELSVKLDLSD RQLQMWFCHR 60 RLKDRKPTPT AGKRQRKDSA ALVSGRGEEM AGGDLGNEPL SGSGSGPGVD LQRAVPWSGN 120 DMSAMRRYYE SAHQSTVEAR AIAFVEAQLG EPLREDGPIL GMEFDPLPPD AFGGSIGVAT 180 VGEQKQSGRP YDANIYEQSD AKPIKGASRT VHEYQFLPEK PTVRTDTYER AAPSYHYGSP 240 TEGPHAKTPL STVSSFIHGN EQAPTVYGFQ SQMAGLNLLS HQGRASNFLP SASEEYGNVH 300 RKTFTNFTMD AQFSAHPIIQ LDNPFIPFAR RVSHDEDVLQ LKRKNKNEEA RIMREVEAHE 360 KRIRKELEKQ DILRRKREEQ IRKEMERLDR ERRKEEERLL REKQREEERY IREQRRELER 420 KEKFLQKESI RAEKMRQREE LRREKEAARL KAANERAIAR KNAKESMELI EDECLELMEL 480 AASSKGLPSM LSLDYETLQN LESFRDMRST FPPKLVQLKK PFGIQPWIDS EENIGNLLMV 540 WRFVITFVDV LGLWPFTLDE FVQAFHDYDS RLLGEIHVSL LRSIIKDIED AARTPSMGLG 600 ANQNCAANPG GGHPQIVEGA YAWGFDIKSW KCNLNPLTWP EILRQFAVSA GFGPQLKKRG 660 IEPAYLHDDN EGYDVKDIIS NLRSGAAVEN AFAIMQERGF SNPRKSRHRL TPGTVKFAAF 720 HVLSLEGSKG LNILEVADRI QKSGLRDLTT SKTPEASIAA ALSRDSRLFE RTAPSTYCVR 780 APYRKNTTDA EAILSAARER IQIFKSGILD VEEADEAERD EESESDAAED PEVDDFGTEI 840 NPEIGAQNSE GVKTVSHGTS LENGKGSYEV REAPEGDLRN VTQGMPSMQS EAFIKVKDTG 900 CSLDDSVDAA GNSNNVANLD LEDTDIDDSN PGEPWVQGLT EGEYSDLSVE ERLNALVALI 960 GVAIEGNSIR IVLEERLEAA NALKKQMWAV AQLDKRRLKE DVIKMQYSPF IGNKTEHILT 1020 IPSSEDRQSP PLTVDEKNIE TTVKLSVPQE RMVDPQNDLD YINSFPSVGN LQMQEYSVGP 1080 DNHPFQQPGF IADKSRKQLK SYIGHKAEEM YVYRSLPLGQ DRRHNRYWQF ITSASRNDPG 1140 CGRIFVELHD GRWRLIDSEE GFDGLLASLD VRGYRESHLQ TMLQKTEILF KETVRRNILH 1200 SNQGRHMKDP AKIEAVEMPV VHDDSVGMDS PTSSVCVADS DMSESSITFS IELGKNETEK 1260 TGALNRYQDL ERWIWKECVG SSILCANKNG KKRCPQLVDI CNSCHGIFYF EENHCHSCHR 1320 TFGKGDINFP PHVVLCKEKL KWNSDCSLRG STSSPLRIRL LKVLLALTEV SVPLEALQPI 1380 WTDMNRKFWG RKLHSSSSAE DLLQVLASLE SAIKIDYLSS NFETISELLY PSNEKGCVTS 1440 NSSSPDGVAV LPWIPLTTAA VALRLMEFDT AISYTLQQKL ETQKEKLPSR FAVMKSSQNE 1500 EISGTPHQAE DFKEGYWEYL GSGPSSCHGR GRGRTRGGRV PKKAIGLKGN PRKQSRVTTK 1560 ERLGQVQVLK WKGRPRGRGG RKRGRRSIRG KKTTLNRIIK VGGERTRPKE SVVYKSPRDL 1620 VEENYNEGET ARLQVEVAEN ASGSGRSEYE EENGDASGDE FDRVLVDDYA GGFNGKSDNL 1680 LEGGNYNVDG DEDDDEEVDD EGEEEDDGAQ DAKGDFDVSS YMNGEWDEEE HRADDGQQQN 1740 MKISVPEDLA EEVKFYVNG

Sequence ? help Back to Top

Protein Sequence Length: 1759 aa Download sequence

MEAGQEGEIR TKRKMKSASQ LEVLEKAYAA EQYPLESVRA ELSVKLDLSD RQLQMWFCHR  60
RLKDRKPTPT AGKRQRKDSA ALVSGRGEEM AGGDLGNEPL SGSGSGPGVD LQRAVPWSGN  120
DMSAMRRYYE SAHQSTVEAR AIAFVEAQLG EPLREDGPIL GMEFDPLPPD AFGGSIGVAT  180
VGEQKQSGRP YDANIYEQSD AKPIKGASRT VHEYQFLPEK PTVRTDTYER AAPSYHYGSP  240
TEGPHAKTPL STVSSFIHGN EQAPTVYGFQ SQMAGLNLLS HQGRASNFLP SASEEYGNVH  300
RKTFTNFTMD AQFSAHPIIQ LDNPFIPFAR RVSHDEDVLQ LKRKNKNEEA RIMREVEAHE  360
KRIRKELEKQ DILRRKREEQ IRKEMERLDR ERRKEEERLL REKQREEERY IREQRRELER  420
KEKFLQKESI RAEKMRQREE LRREKEAARL KAANERAIAR KNAKESMELI EDECLELMEL  480
AASSKGLPSM LSLDYETLQN LESFRDMRST FPPKLVQLKK PFGIQPWIDS EENIGNLLMV  540
WRFVITFVDV LGLWPFTLDE FVQAFHDYDS RLLGEIHVSL LRSIIKDIED AARTPSMGLG  600
ANQNCAANPG GGHPQIVEGA YAWGFDIKSW KCNLNPLTWP EILRQFAVSA GFGPQLKKRG  660
IEPAYLHDDN EGYDVKDIIS NLRSGAAVEN AFAIMQERGF SNPRKSRHRL TPGTVKFAAF  720
HVLSLEGSKG LNILEVADRI QKSGLRDLTT SKTPEASIAA ALSRDSRLFE RTAPSTYCVR  780
APYRKNTTDA EAILSAARER IQIFKSGILD VEEADEAERD EESESDAAED PEVDDFGTEI  840
NPEIGAQNSE GVKTVSHGTS LENGKGSYEV REAPEGDLRN VTQGMPSMQS EAFIKVKDTG  900
CSLDDSVDAA GNSNNVANLD LEDTDIDDSN PGEPWVQGLT EGEYSDLSVE ERLNALVALI  960
GVAIEGNSIR IVLEERLEAA NALKKQMWAV AQLDKRRLKE DVIKMQYSPF IGNKTEHILT  1020
IPSSEDRQSP PLTVDEKNIE TTVKLSVPQE RMVDPQNDLD YINSFPSVGN LQMQEYSVGP  1080
DNHPFQQPGF IADKSRKQLK SYIGHKAEEM YVYRSLPLGQ DRRHNRYWQF ITSASRNDPG  1140
CGRIFVELHD GRWRLIDSEE GFDGLLASLD VRGYRESHLQ TMLQKTEILF KETVRRNILH  1200
SNQGRHMKDP AKIEAVEMPV VHDDSVGMDS PTSSVCVADS DMSESSITFS IELGKNETEK  1260
TGALNRYQDL ERWIWKECVG SSILCANKNG KKRCPQLVDI CNSCHGIFYF EENHCHSCHR  1320
TFGKGDINFP PHVVLCKEKL KWNSDCSLRG STSSPLRIRL LKVLLALTEV SVPLEALQPI  1380
WTDMNRKFWG RKLHSSSSAE DLLQVLASLE SAIKIDYLSS NFETISELLY PSNEKGCVTS  1440
NSSSPDGVAV LPWIPLTTAA VALRLMEFDT AISYTLQQKL ETQKEKLPSR FAVMKSSQNE  1500
EISGTPHQAE DFKEGYWEYL GSGPSSCHGR GRGRTRGGRV PKKAIGLKGN PRKQSRVTTK  1560
ERLGQVQVLK WKGRPRGRGG RKRGRRSIRG KKTTLNRIIK VGGERTRPKE SVVYKSPRDL  1620
VEENYNEGET ARLQVEVAEN ASGSGRSEYE EENGDASGDE FDRVLVDDYA GGFNGKSDNL  1680
LEGGNYNVDG DEDDDEEVDD EGEEEDDGAQ DAKGDFDVSS YMNGEWDEEE HRADDGQQQN  1740
MKISVPEDLA EEVKFYVNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein