PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G26337

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 342aa MW: 38482.3 Da PI: 9.2474

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G26337	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.9	1.7e-31	96	247	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.............vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+e++ ++L+ k+ +++ + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ Ro06_G26337 96 LPAGVKFDPTDQEVL-QHLEGKMWTSSdiaaA---NklhhhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFFHRPSKAYTTGSRKRRKvht 188 799********99.8999998877765550...245556666776554666657******.555666688**************7576 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Ro06_G26337 189 drdsngeGGETRWHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 247 666655433778********.9*********6657999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
SSFNKSKLPL PLHSVNKRTR RELSLSLSEL SNIGASTGAV EEEYSIVYKE MTQCNDLGQE 60 DQVIISKDCL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL QHLEGKMWTS 120 SDIAAANKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH RPSKAYTTGS 180 RKRRKVHTDR DSNGEGGETR WHKTGKTRPV FVGGKVKGYK KILVLYTNYG KQRKPEKTNW 240 VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDF INSSAKLMKG QSGHNEQALV 300 EYCNNANSFI SFDQNGQDRS SSTPQIIPHH FPLHDGSFVS LK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

SSFNKSKLPL PLHSVNKRTR RELSLSLSEL SNIGASTGAV EEEYSIVYKE MTQCNDLGQE  60
DQVIISKDCL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL QHLEGKMWTS  120
SDIAAANKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH RPSKAYTTGS  180
RKRRKVHTDR DSNGEGGETR WHKTGKTRPV FVGGKVKGYK KILVLYTNYG KQRKPEKTNW  240
VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDF INSSAKLMKG QSGHNEQALV  300
EYCNNANSFI SFDQNGQDRS SSTPQIIPHH FPLHDGSFVS LK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-107	NAC family protein