PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25990
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 454aa    MW: 51541.5 Da    PI: 9.7695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25990genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.8e-08419438525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   Cr++ar G C yGd+CkF+H
  Ro06_G25990 419 MCRYYAR-GRCYYGDNCKFSH 438
                  6******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MAVTEEEGED FSESGGSDPG FDSDDSVKDP SYITLEETHA KFSKLSIKTK SKACIVKGID  60
LEAALDGEEV VVPELNQKDA KSFEHVQNMI QDKQIEKLKV EQCKLYLRKN GLRLTGNKDT  120
LIQRIKEHLE ILNGGGEKKY PGSSFVLNCK GDACTGDVVM FEQNVYERFD IASRSGRGPP  180
CGTRVVAGRI VKESYGAAKQ QHTFTIEVLW SKGEKPLPPL HPLLIKGRNL YRLKTLRQRW  240
EDEGERQKIL MEKHSRGSLA RSDREARVQE KEMRKMLKTN RVSRKEEPKN NQSHLNSTSS  300
FKSSVQPHQS CSLVNPANLH QSFGPGNTKM GPQQSGLSTD SAKPATQTHH SVTLPQVKQN  360
TVIQDRYFNQ ASQHLKVSSY VTAMKLCPLP SPLKKTYQRQ PLTSLNHSLP TSPRLQKQMC  420
RYYARGRCYY GDNCKFSHEM KESYSERRFY KPNW