PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25560
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family VOZ
Protein Properties Length: 446aa    MW: 49942.1 Da    PI: 5.4041
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25560genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ358.42.8e-1102024123217
          VOZ   3 psaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsl 100
                    +flgp calwdc+r     e  +dyc sfha+ al++g+pg +p++rp+gi+lkd++lf+al a  qgk vgip+cegaat kspwn ++lf+ls+
  Ro06_G25560 202 EPSFLGPTCALWDCSRLL---ECGKDYCCSFHAASALEDGQPGKAPIFRPRGISLKDSALFDALIAWNQGKAVGIPNCEGAATLKSPWNDSKLFNLSF 296
                  567************975...6679************************************************************************* PP

          VOZ 101 legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakg 198
                  leget+rewlffdkprraf sgnr+qrslpd+sgrgwhesrkq+mkefgg+krsyymdpqpss  ewhl+eye+n++d++alyrlelk    kks+kg
  Ro06_G25560 297 LEGETVREWLFFDKPRRAFGSGNRRQRSLPDHSGRGWHESRKQIMKEFGGQKRSYYMDPQPSSDQEWHLFEYEVNNSDSCALYRLELKFGSVKKSPKG 394
                  ************************************************************************************************** PP

          VOZ 199 kvskdsladlqkklgrlta 217
                  kvs+  +adlqkk+g+lta
  Ro06_G25560 395 KVSN-EVADLQKKMGKLTA 412
                  **86.59**********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MIKDSKGKCE SPSHKLLKEK AKTRVEYLQA IFTNLQSARK ESRTDDIATL EEVNKMLQEW  60
KAELNEPSPA SSLLGSSLGS FSEELARLLR PDEEDDATSP LKDLLPAKPE SDLQNLDLAN  120
LVQFTEDFFV SPEPQEPQEN FQEFHQCKNT ASGFQNPMVD NLDHHFDFHQ YVNEGLFIGG  180
NDMKQLEEDA MPNVLPVISP TEPSFLGPTC ALWDCSRLLE CGKDYCCSFH AASALEDGQP  240
GKAPIFRPRG ISLKDSALFD ALIAWNQGKA VGIPNCEGAA TLKSPWNDSK LFNLSFLEGE  300
TVREWLFFDK PRRAFGSGNR RQRSLPDHSG RGWHESRKQI MKEFGGQKRS YYMDPQPSSD  360
QEWHLFEYEV NNSDSCALYR LELKFGSVKK SPKGKVSNEV ADLQKKMGKL TAEVATDDAK  420
NAKGKAKKKA DAGNIFSSQS PMTSTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-121VOZ family protein