PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G25466

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 456aa MW: 50068.1 Da PI: 8.9799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G25466	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	51	71	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Ro06_G25466 51 CEICGKGFQRDQNLQLHRRGH 71 *******************88 PP
2	zf-C2H2	13.5	0.00021	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Ro06_G25466 125 WKCEKCSKRYAVQSDWKAHSKTC 147 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MGFFKTQLQY LDPILLLSKR RETSQETQAN PEAEVIALSP KTLMATNRFL CEICGKGFQR 60 DQNLQLHRRG HNLPWKLKQR TSKEPRKRVY VCPEKSCVHH HPSRALGDLT GIKKHFCRKH 120 GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR AFCDALAEET 180 ARVNAVSNIH NNAMLSNTNY HSYMGNNASS LLLGPPNMAQ LQFSSIFKPI SSNDATDAMS 240 RGLSLWMGQG SNEEITVNNQ NQHQHQLGSV SSSAGSIFGD PNNISVSCSE PPPPSDHYQL 300 NWVLGSNNKL SSSNNAHHQD QLTITSSAAA NSLPSLYTHQ TPSANMSATA LLQKAAQIGA 360 TSTDTSSLLG SFGLKCNSNS TTASQGVTQV QDGSKVCGLY GTVENPGAPD HILHMHPAKR 420 RHIQSEESAG GGQTRDFLGV GGQTICHSSP INGYWV

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MGFFKTQLQY LDPILLLSKR RETSQETQAN PEAEVIALSP KTLMATNRFL CEICGKGFQR  60
DQNLQLHRRG HNLPWKLKQR TSKEPRKRVY VCPEKSCVHH HPSRALGDLT GIKKHFCRKH  120
GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR AFCDALAEET  180
ARVNAVSNIH NNAMLSNTNY HSYMGNNASS LLLGPPNMAQ LQFSSIFKPI SSNDATDAMS  240
RGLSLWMGQG SNEEITVNNQ NQHQHQLGSV SSSAGSIFGD PNNISVSCSE PPPPSDHYQL  300
NWVLGSNNKL SSSNNAHHQD QLTITSSAAA NSLPSLYTHQ TPSANMSATA LLQKAAQIGA  360
TSTDTSSLLG SFGLKCNSNS TTASQGVTQV QDGSKVCGLY GTVENPGAPD HILHMHPAKR  420
RHIQSEESAG GGQTRDFLGV GGQTICHSSP INGYWV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-141	C2H2 family protein