PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25215
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91939.5 Da    PI: 6.4685
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25215genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ro06_G25215 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                 5679*****************************************************97 PP
2START167.59.5e-531603682205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++
  Ro06_G25215 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVLPTAngGTIELLYMQ 256
                  7899******************************************************.**************************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p  df+++Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+   ++++lr+l++s+++ 
  Ro06_G25215 257 LYAPTTLAPaCDFWMLRYTSVLEDGSLVVCVRSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCGVPEVLRPLYESSAVL 354
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++k+++a+l+++++
  Ro06_G25215 355 AQKMTMAALRQLRQ 368
                  **********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGKG VMDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT  120
QTTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDLPSWL RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPACDFW MLRYTSVLED GSLVVCVRSL KNTQNGPSMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPCGV PEVLRPLYES SAVLAQKMTM  360
AALRQLRQIA HEVSQSSVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSLMGNDGMD  420
DVTILINSSP DKLMGLNLSF GNGFPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGIGHSPEDP  540
MMQTREMFLL QLCSGMDENA VGSCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEVGPTGNRA SSEYSANAGC VRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRSPLGT PEAQTLARWI CNSYRGYLGV ELLKSCNEGS  720
ESNLKSLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDIALEK IFDDHGRKTL  780
FSEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEETAHCICF LFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein