PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25210
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HB-other
Protein Properties Length: 296aa    MW: 34174.2 Da    PI: 5.6807
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25210genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-051167650
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqN 50
                  ft++++  +e+ F++  ++ +++e  + LA++           ++t +qV  WFq 
  Ro06_G25210 11 VFTHSEIMKMENIFKNtpQQSLTREFFQNLATNFscqpgrvgksDITWEQVEGWFQS 67
                 69*************98899************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MERKPMNSVS VFTHSEIMKM ENIFKNTPQQ SLTREFFQNL ATNFSCQPGR VGKSDITWEQ  60
VEGWFQSKQR ELQAKGNSSS GAFDWVVESH VDLSDMTMFN NAPHNSQKPK VSSFQKTYDD  120
NFDTDPCVTD LSELAFEAKS SREGAWYDVA SFLSYRVVSS GELEVRVRFA GFGREDDEWV  180
NVRRAVRDRS IPLEDSECHK LKVGDLVLCF QDREDQAVYC DAYVVEIQRG LHDQTGCRCI  240
FVVRFDHDNT KEQVPLGRLC CRPSQYTSSA IVKTNQDVKT KQEIHRDKDM KFSFLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-64HB-other family protein