PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22690
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 286aa    MW: 32296 Da    PI: 5.7596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22690genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-202978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Ro06_G22690 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                 69****999.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MENCRKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AFLNLPHLQP NSSNPSIKSQ KFKWFPSQNF ISMFPPCGML  120
NINAQPSVHV IHQRLQELKK NGVLSQTTPS SSSSSCDSKP EAHITRDKTQ TENVAEKEKD  180
VEVSSEKVVG GQEEKPQIDL NEFLQQLGVL KKERQSEETE TTKSFTAPES SITETSDEFG  240
PFADTNFNWD AFIEMHGIED QGAEAGTFQV YDVNEELSFP TSIWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.18e-84ERF family protein