PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22445
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family AP2
Protein Properties Length: 402aa    MW: 44410.6 Da    PI: 9.0988
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22445genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-1371127155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Ro06_G22445  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127
                  57*******************6666777775555599******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MASSSSDPGP KTESGSGSGG AEASEAAAAA AATTDQQLLY RGLKKAKKER GCTAKERISK  60
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGMS KYRALSSRWE  180
PSFGRMGGSE YFNNIHYGTG DDPATESEFL GTFCIERKID LTSYIKWWGP TKSRQADSIM  240
KSSEEAKHGF AGDSGGELKT LEWETQHTEP YQMPRLGVCQ EGRKHKGPRV SAMSILSRSP  300
AYKSLQEKAS IKQEKNADND ENENKNAIHK MDYGKAVEKS TSHDGGNERL SAALGMSGGL  360
SLQRNAFPLT PFLSAPLLSY NMIDPLADPM LWTSLAPVLP EV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-151AP2 family protein