PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G22346

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 368aa MW: 41283.7 Da PI: 6.9037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G22346	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2.1e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Ro06_G22346 15 MLPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 111 579*************************.89***********9888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfy+gra kg+ktdW+mhe+rl Ro06_G22346 112 KCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 142 77*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEEKNDQMEK VDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYRGRAAKG VKTDWMMHEF RLPSLADSSP HKKLLDKSLP PNDAWAICRI FKKTNSMAQR 180 ALSQSWLSPL PEPTASGFLS QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QQQASNANYS 240 SFDSPPYKPN FNPALVGDNI PNGFMFSPIE MSSPPNFNHA LVGDLSNNTT SGSIDFDGSQ 300 QQQFSGFSIS LAQDQIQENT STSTAQARLT IIILSGGLSD QLGFPSVWVQ MILVTCLLAI 360 LQTNAILD

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEEKNDQMEK VDDVMLPGFR FHPTDEELVG FYLKRKIQQR LLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYRGRAAKG VKTDWMMHEF RLPSLADSSP HKKLLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALSQSWLSPL PEPTASGFLS QCPQFSSENN ISCTTDLGSA IQFWSNNNDL QQQASNANYS  240
SFDSPPYKPN FNPALVGDNI PNGFMFSPIE MSSPPNFNHA LVGDLSNNTT SGSIDFDGSQ  300
QQQFSGFSIS LAQDQIQENT STSTAQARLT IIILSGGLSD QLGFPSVWVQ MILVTCLLAI  360
LQTNAILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-106	NAC family protein