PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G22299
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 321aa    MW: 36219.1 Da    PI: 9.7817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G22299genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM873.6e-27291741128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekewyfFskrdkkyatgkrknratks 80 
                  lp G++F+P+ + +  +yL+ kv++ +++++ vi+++++y +eP+dL+                   ++++++ ++yfF++ +kk ++gk+++r t +
  Ro06_G22299  29 LPSGVKFRPSHKHIF-HYLRMKVHTGHIDVSGVIRSINLYIYEPHDLKDafvhlallqlivsfdtglAFDNGDGRLYFFTPLKKKFTKGKKTKRLTGH 125
                  699*********998.**************9****************84589999999999888877666788899********************** PP

          NAM  81 gyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                  g+Wk t k+  ++  +++ + +k+ L f+   ++ k+ kt+W+m+eyrl
  Ro06_G22299 126 GFWKVTQKTIYIMGDDNKPMMTKTPLCFFyPLQKGKSLKTQWLMDEYRL 174
                  **************999*********987355888889*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MNENKSSSNA LMELPSSIKE NEIEWKKGLP SGVKFRPSHK HIFHYLRMKV HTGHIDVSGV  60
IRSINLYIYE PHDLKDAFVH LALLQLIVSF DTGLAFDNGD GRLYFFTPLK KKFTKGKKTK  120
RLTGHGFWKV TQKTIYIMGD DNKPMMTKTP LCFFYPLQKG KSLKTQWLMD EYRLINQDNH  180
PVMLENWALC VVHYKPIRGK NGNNVEQVED KRSGTNKSST AGSMSEAVGS PSQNSMVGSS  240
YESNPHISCG SNNFNVASSS YPQGTSSCPQ PFQTLSNPNK RQQCSTSYDQ TLYITCPSND  300
IASHAQFPKR RSPIANDTPQ L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.15e-14NAC family protein