PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G22203

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 453aa MW: 49505.4 Da PI: 5.0827

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G22203	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	47	84	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C++++ ++++ C d ++ lC++C + H++ H Ro06_G22203 47 LCDKCNAQPAIVRCLDENVSLCQSCEWN-HSNgvagmgH 84 6************************877.8666666666 PP
2	CCT	62.9	1e-21	397	440	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ Ro06_G22203 397 RDKAKMRYEEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKSG 440 899**************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MRHLCELCWR ASAIVYCKAD MARLCLNCDG CVHSANALAR RHPRWLLCDK CNAQPAIVRC 60 LDENVSLCQS CEWNHSNGVA GMGHQSQAIS CYTGCPSLSE ISRIWSAVLD GGSPSGGFGA 120 SGWESLAGSG VPKNETNCIS NCLERRDSEG SSFGVVSAGK LNEVLAESNC TPKFEPWMTP 180 STIIPSNPNC IQPQCKDQAP FLPQESSQLP KELQDSSNFK DLGIQDGNDI CEGLDMDDVP 240 LDVENGDQLF SCSEGPSRYP FEDGELDCLL MDQKNLSVTE SNGPLSDNAI QQASPSRQQD 300 CTVGFQSSCV SDSVMAPVMN AGSSVNCSLL MNPNCRNINL QGLINPTGQV HSSISLSLSS 360 ITRETTHPDY QDCGLSPVFL SAEPWDSTLE TGSPRARDKA KMRYEEKKKT RTFGKQIRYA 420 SRKARADTRK RVKGRFVKSG EEYDYDPLVR SSF

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MRHLCELCWR ASAIVYCKAD MARLCLNCDG CVHSANALAR RHPRWLLCDK CNAQPAIVRC  60
LDENVSLCQS CEWNHSNGVA GMGHQSQAIS CYTGCPSLSE ISRIWSAVLD GGSPSGGFGA  120
SGWESLAGSG VPKNETNCIS NCLERRDSEG SSFGVVSAGK LNEVLAESNC TPKFEPWMTP  180
STIIPSNPNC IQPQCKDQAP FLPQESSQLP KELQDSSNFK DLGIQDGNDI CEGLDMDDVP  240
LDVENGDQLF SCSEGPSRYP FEDGELDCLL MDQKNLSVTE SNGPLSDNAI QQASPSRQQD  300
CTVGFQSSCV SDSVMAPVMN AGSSVNCSLL MNPNCRNINL QGLINPTGQV HSSISLSLSS  360
ITRETTHPDY QDCGLSPVFL SAEPWDSTLE TGSPRARDKA KMRYEEKKKT RTFGKQIRYA  420
SRKARADTRK RVKGRFVKSG EEYDYDPLVR SSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-85	CO-like family protein