PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G20994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 33425.9 Da PI: 9.3198 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.5e-07 | 68 | 92 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lC++f G C+yG+ C FaHg Ro06_G20994 68 YKTQLCQNFKW-GCCHYGEACLFAHG 92 9**********.*************8 PP | |||||||
2 | zf-CCCH | 21.2 | 5.2e-07 | 126 | 147 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lCr f+ +G+C yGd+C+F H+ Ro06_G20994 126 LCRWFFNGGQCAYGDKCRFRHV 147 9******************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MSNPRRTCKF LTPFLEPSGD RYKLEPQFPL LSKESEDIEH QPLKKPRVSK VGSDSMMIPE 60 RRNKWLPYKT QLCQNFKWGC CHYGEACLFA HGINDIRNTV PNSENEKGLL GRTNDAHHRI 120 CAEFQLCRWF FNGGQCAYGD KCRFRHVIPK SFRDESVITI STSGSKGSLI SGSGQFGCKR 180 SLGMDFDTNG EKGGRHFRKQ SSVATGRGLL NNTCMASGHF AHGHAALREL RGYTSVDSRT 240 VQTKKHSKTC TSSKQHEQGM NYNFKYWNEL EKMSRIYADW IEEIPLVHSK VEC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-13 | C3H family protein |