PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G20994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 293aa    MW: 33425.9 Da    PI: 9.3198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G20994genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.5e-076892126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykt lC++f   G C+yG+ C FaHg
  Ro06_G20994 68 YKTQLCQNFKW-GCCHYGEACLFAHG 92
                 9**********.*************8 PP

2zf-CCCH21.25.2e-07126147526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  lCr f+ +G+C yGd+C+F H+
  Ro06_G20994 126 LCRWFFNGGQCAYGDKCRFRHV 147
                  9******************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MSNPRRTCKF LTPFLEPSGD RYKLEPQFPL LSKESEDIEH QPLKKPRVSK VGSDSMMIPE  60
RRNKWLPYKT QLCQNFKWGC CHYGEACLFA HGINDIRNTV PNSENEKGLL GRTNDAHHRI  120
CAEFQLCRWF FNGGQCAYGD KCRFRHVIPK SFRDESVITI STSGSKGSLI SGSGQFGCKR  180
SLGMDFDTNG EKGGRHFRKQ SSVATGRGLL NNTCMASGHF AHGHAALREL RGYTSVDSRT  240
VQTKKHSKTC TSSKQHEQGM NYNFKYWNEL EKMSRIYADW IEEIPLVHSK VEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-13C3H family protein