PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20624

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

E2F/DP

Protein Properties

Length: 475aa MW: 52175.2 Da PI: 4.7216

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20624	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86	2.9e-27	148	213	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg Ro06_G20624 148 RYDSSLGLLTKKFITLIKQAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 213 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MSGCARAPNR QPAPPPPTTV GGSQIVPPMR RHLVFESNKP PFFPPADYHQ FSGGAQRPAD 60 QEPEAIVVRS PQFKRKGAAD NNEVENSDWT SSPGYNNIEQ SPLQTPVSTT KAGKTNNRSK 120 ASKGKSGPQT PGSNAGSPCP LTPAGSCRYD SSLGLLTKKF ITLIKQAEDG ILDLNKAAET 180 LEVQKRRIYD ITNVLEGIGL IEKKLKNRIR WKGFDASRPG DLDGDLSILQ AEVENLSLKE 240 RSLDDRIREM EEKLRDLSGN ENNRKWLFVT EEDIKGLPCF QNETLIAIKA PHGTTLEVPD 300 PDEAVDYPQR RYRIILRSTM GPIDVYLVSQ FEEKFDDING VEPPVSFPIA SGSGSNEQST 360 TEMVTGHSRG KEIEPRAQQA QADQTSSDIN ASQEFAGGMM KIVPSDVDND ADYWLLSGVD 420 VSITDMWRTD SIEWNGEDML NGDFGLPDVS TPRPQTPPSG IVEVPSHAVN FSQSI

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MSGCARAPNR QPAPPPPTTV GGSQIVPPMR RHLVFESNKP PFFPPADYHQ FSGGAQRPAD  60
QEPEAIVVRS PQFKRKGAAD NNEVENSDWT SSPGYNNIEQ SPLQTPVSTT KAGKTNNRSK  120
ASKGKSGPQT PGSNAGSPCP LTPAGSCRYD SSLGLLTKKF ITLIKQAEDG ILDLNKAAET  180
LEVQKRRIYD ITNVLEGIGL IEKKLKNRIR WKGFDASRPG DLDGDLSILQ AEVENLSLKE  240
RSLDDRIREM EEKLRDLSGN ENNRKWLFVT EEDIKGLPCF QNETLIAIKA PHGTTLEVPD  300
PDEAVDYPQR RYRIILRSTM GPIDVYLVSQ FEEKFDDING VEPPVSFPIA SGSGSNEQST  360
TEMVTGHSRG KEIEPRAQQA QADQTSSDIN ASQEFAGGMM KIVPSDVDND ADYWLLSGVD  420
VSITDMWRTD SIEWNGEDML NGDFGLPDVS TPRPQTPPSG IVEVPSHAVN FSQSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-178	E2F/DP family protein