PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G20266
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 558aa    MW: 65368.9 Da    PI: 6.1099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G20266genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.91.1e-41231501128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  lppG++F P+d el+ +yLk+k+ +++l++ + i++v+iy+++P++L  +  + +e ewyfFs+r++ky +g+r+ r+++ g+Wkat +d+ +++++g
  Ro06_G20266  23 LPPGYQFMPSDVELILYYLKRKILNQELPI-NRIHDVNIYQYHPQTLTeMYPRIKEIEWYFFSSRERKYLNGSRPDRTAQGGFWKATKRDEVITAQGG 119
                  79****************************.77**************8344445667***************************************** PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e++g k  L fy g++++++kt+W mheyr+
  Ro06_G20266 120 EEIGFKMQLDFYAGTHEQSRKTNWKMHEYRV 150
                  *****************************97 PP
2NAM125.93.3e-393074351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppG+rF Ptde l+ +yL+kk+ +++  +++ + i++v+iy+++P+dL ++++  +++ewyfF++ ++ky +++r nra+++gyWka g  +++++k
  Ro06_G20266 307 MPPGYRFAPTDEVLILCYLRKKLMNESkaIPI-NRIRDVNIYQYHPRDLTAMYELlRDSEWYFFTPISRKYVNSSRLNRAAHNGYWKAVGM-NPIKDK 402
                  79********************9999944555.45**************8433335889*******************************9.89**** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++e+vg +k+L fy+g  pkg+kt+W mhey++
  Ro06_G20266 403 NNEVVGYRKSLEFYEGILPKGNKTEWKMHEYTI 435
                  *******************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MEPSNQQSAT MSAEEIEAYF RSLPPGYQFM PSDVELILYY LKRKILNQEL PINRIHDVNI  60
YQYHPQTLTE MYPRIKEIEW YFFSSRERKY LNGSRPDRTA QGGFWKATKR DEVITAQGGE  120
EIGFKMQLDF YAGTHEQSRK TNWKMHEYRV KEENNENTSP HQINKKGECS SMRLNDCVLY  180
KIYLKRNCKA DTYKNDSAKT SDNSDQEVVP VTNVTSHDDQ ENKSAIQHED DQHHSLNASQ  240
FDYNGFSTLM KNFDYEPLQF QTFGSVYRDV GSSSNNFYNQ NGANSYNMYS MQIILNESDT  300
DEYFNSMPPG YRFAPTDEVL ILCYLRKKLM NESKAIPINR IRDVNIYQYH PRDLTAMYEL  360
LRDSEWYFFT PISRKYVNSS RLNRAAHNGY WKAVGMNPIK DKNNEVVGYR KSLEFYEGIL  420
PKGNKTEWKM HEYTINEAIV PPNSTNAKTR MKLDDCVLCK IFKKRGVKKN ETNDQLELPI  480
DRSQANISMV GPSSTTSSDQ LPVHDAMEHE PYSNHEVQKH GSSDSMQEEE EEEEDDVDRV  540
CYISYKQIFV YIRTILSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-42NAC family protein