PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20259

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 721aa MW: 78439.9 Da PI: 6.272

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20259	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	303	323	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Ro06_G20259 303 PCPDFRK-GACRRGDMCEYAHG 323 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MCYGSERVKP ISSSVPSPIS VDERSNTAMN HLTVETEDTF ASLLELAANN DIESFKRSIE 60 HNPSAIDEIG LWYCRQKGSK QMVNEQRTPL MVAATYGSID VIKLILSLSD ADVNQTCGLD 120 RSTALHCAAS GGAENAVDSV RLLVAAGADP NLIDANGHRP IDVIVVPRRL QNVRLALEEL 180 LMINGSVGEQ ILTVSTRALS PPLSTSPENG SPSALDFTCS PTKSKFYNLS ISSASEKKEY 240 PVDPSLPDIK NSIYSTDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCARRVC FFAHTAEELR 360 PLYVSTGSAV PSPRSSTSGA SAMDFAAAMS LLPGSPSSLS VMSPSPFTPP MSPSGNGMSH 420 SSVGWPQPNV PALHLPGSNI QSSRLRSSLC ARDMAADDFD LLPEFDMQQQ QLLNELSMSN 480 SLNRSGRLKT LTPSNLDDLF SAENLSPRYS DQALASAVFS PTHKSALLNQ FQQQQSMLSP 540 VHTNFSPKTS VDHPLLQASF GAPSSGRMSP RNVEPISPMG PRVSMLAQRE KQQFRSLSSR 600 ELGSSSASNV GSAANSWSKW GSSDGKPDWA VTSDELGKLR RSSSFEMGNN GEEPDLSWVQ 660 SLVKESPTEI KEKLTAPVSG VTASGSSNED LSANSQMESV DHVAMGAWID QLHLDLVAQQ 720 N

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MCYGSERVKP ISSSVPSPIS VDERSNTAMN HLTVETEDTF ASLLELAANN DIESFKRSIE  60
HNPSAIDEIG LWYCRQKGSK QMVNEQRTPL MVAATYGSID VIKLILSLSD ADVNQTCGLD  120
RSTALHCAAS GGAENAVDSV RLLVAAGADP NLIDANGHRP IDVIVVPRRL QNVRLALEEL  180
LMINGSVGEQ ILTVSTRALS PPLSTSPENG SPSALDFTCS PTKSKFYNLS ISSASEKKEY  240
PVDPSLPDIK NSIYSTDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCARRVC FFAHTAEELR  360
PLYVSTGSAV PSPRSSTSGA SAMDFAAAMS LLPGSPSSLS VMSPSPFTPP MSPSGNGMSH  420
SSVGWPQPNV PALHLPGSNI QSSRLRSSLC ARDMAADDFD LLPEFDMQQQ QLLNELSMSN  480
SLNRSGRLKT LTPSNLDDLF SAENLSPRYS DQALASAVFS PTHKSALLNQ FQQQQSMLSP  540
VHTNFSPKTS VDHPLLQASF GAPSSGRMSP RNVEPISPMG PRVSMLAQRE KQQFRSLSSR  600
ELGSSSASNV GSAANSWSKW GSSDGKPDWA VTSDELGKLR RSSSFEMGNN GEEPDLSWVQ  660
SLVKESPTEI KEKLTAPVSG VTASGSSNED LSANSQMESV DHVAMGAWID QLHLDLVAQQ  720
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein