PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G20125
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 431aa    MW: 47523.9 Da    PI: 7.3378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G20125genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08142162526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C +++r G C++Gd+C FaHg
  Ro06_G20125 142 VCADYRR-GGCSRGDSCEFAHG 162
                  799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MNSVCAEQHK LYTSHHLLSS KKPHHLLREV DIPPRKLLTR RTAAHQDLSS SPDMYSTTDS  60
PRFSASDEAL LRKFLPYNTG ASDDDDDASD DPYSSDHFRM FEFKVRRCTR SRSHDWTDCP  120
FAHPGEKARR RDPRRYHYSG TVCADYRRGG CSRGDSCEFA HGVFECWLHP ARYRTEACKD  180
GKNCKRKVCF FAHTPCQLRI LPVNHSRSSS PEQVISPSLA SCKKTNTNLN SPSSTHCCLF  240
CGNSMTSSPT STLLGMSHMS PPLSPMSPYG ESNSHFSSGL DQIHACAAGM LSYKDVLSDL  300
MTSLEAMKFN NMEPTSSSPL SSPINSSAAA AAANYPWVDV SSFNAATEDQ QQQFILSPST  360
PNPLSAGINC FSPGSTSAGN CSRKSLVFDE QDNKVNATNG GGCSPDPDLG WVNDLLIQEF  420
GVLYARKENQ I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-74C3H family protein