PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G19741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 277aa MW: 31472.5 Da PI: 8.8816 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86 | 2.2e-27 | 23 | 72 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien+s rqvtfskRr g++KKA+EL vLCda+vaviifs+tgklye s Ro06_G19741 23 KKIENTSSRQVTFSKRRGGLFKKANELAVLCDAQVAVIIFSQTGKLYEIS 72 68*********************************************966 PP | |||||||
2 | K-box | 24.9 | 8.5e-10 | 103 | 197 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l+e+ +e+ + +++ L+++ e +q + +++G++L+ Lsl +L +Le+q ++ +++kK+e+l+e+ +++ k ++++ +e + L++++ee Ro06_G19741 103 LHESAEEEPKFDSSALQRKFEAMQqkiDALHRIKGQKLDGLSLSDLCELEKQQMEGELAVKNKKEEILREEKQKTTKENEKAMQEIEHLKREIEE 197 7888888889999999999999995544557889**************************************9999999999999999*999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MVGNDPEPNS QTRKMGRGRI EIKKIENTSS RQVTFSKRRG GLFKKANELA VLCDAQVAVI 60 IFSQTGKLYE ISSTRMEHIL TRYRNCANKG LLQLESSEER PHLHESAEEE PKFDSSALQR 120 KFEAMQQKID ALHRIKGQKL DGLSLSDLCE LEKQQMEGEL AVKNKKEEIL REEKQKTTKE 180 NEKAMQEIEH LKREIEELRR QSYVRPSIIE SHPPKKRLLY ITNSSKALSN CSTASEEESV 240 EHSDTSLHLG LSSSSHKRKA ASIRPNSNDS GSQVASE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-40 | MIKC_MADS family protein |