PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G19741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31472.5 Da    PI: 8.8816
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G19741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-272372150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k+ien+s rqvtfskRr g++KKA+EL vLCda+vaviifs+tgklye s
  Ro06_G19741 23 KKIENTSSRQVTFSKRRGGLFKKANELAVLCDAQVAVIIFSQTGKLYEIS 72
                 68*********************************************966 PP

2K-box24.98.5e-101031979100
        K-box   9 leeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  l+e+ +e+ + +++ L+++ e +q     + +++G++L+ Lsl +L +Le+q  ++   +++kK+e+l+e+ +++ k ++++ +e + L++++ee
  Ro06_G19741 103 LHESAEEEPKFDSSALQRKFEAMQqkiDALHRIKGQKLDGLSLSDLCELEKQQMEGELAVKNKKEEILREEKQKTTKENEKAMQEIEHLKREIEE 197
                  7888888889999999999999995544557889**************************************9999999999999999*999986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MVGNDPEPNS QTRKMGRGRI EIKKIENTSS RQVTFSKRRG GLFKKANELA VLCDAQVAVI  60
IFSQTGKLYE ISSTRMEHIL TRYRNCANKG LLQLESSEER PHLHESAEEE PKFDSSALQR  120
KFEAMQQKID ALHRIKGQKL DGLSLSDLCE LEKQQMEGEL AVKNKKEEIL REEKQKTTKE  180
NEKAMQEIEH LKREIEELRR QSYVRPSIIE SHPPKKRLLY ITNSSKALSN CSTASEEESV  240
EHSDTSLHLG LSSSSHKRKA ASIRPNSNDS GSQVASE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-40MIKC_MADS family protein