PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19731

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 411aa MW: 46003.6 Da PI: 6.6049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130	1.8e-40	33	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevls 94 p+Gf F+P+deel+ +yL++k+ +k+l++ + + +++iyk+ P +L ++k ee+ +yfFs+rd+ky++g+r+nr+t +g+Wkatgkdk++++ Ro06_G19731 33 PRGFMFQPSDEELILQYLTNKLLNKPLPT-NKVLDLKIYKFTPMQLADMHKFrEEEAMYFFSPRDRKYPNGNRPNRITGdgkrTGFWKATGKDKQIFN 129 89*************************.77999*******854444245577**************9765556899******** PP NAM 95 kkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++++g +k Lvfy+ ++ ++ektdW+mhe+++ Ro06_G19731 130 ERNKVIGARKALVFYERdSNYEAEKTDWIMHEFKI 164 ***********65378899********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MASTSSNRNP NNSAPYDDCE MMKPYEFFFN RFPRGFMFQP SDEELILQYL TNKLLNKPLP 60 TNKVLDLKIY KFTPMQLADM HKFREEEAMY FFSPRDRKYP NGNRPNRITG DGKRTGFWKA 120 TGKDKQIFNE RNKVIGARKA LVFYERDSNY EAEKTDWIMH EFKIHENIIG PTTTTARAPG 180 DNRLDDWVLC KVYLSKMAKP NPNTRDEAEK TEMIDSKPLE QDLPLLESSA TPNLGEQVNM 240 NNQSVQPLNN GIMTVPYGST TGFVSQDVTN LCMRSHADHR QNLSLLPSSS QQQVINSVSS 300 AISSLAGGDN NNGMITTPYG YADHQHNSLM PSVINSVDSA IASLAAGPVL PRGFGAQYGT 360 NIAPPNGIPA YQSYQSHGFG AHPSLPSFEN GCLPPLPQGY YSYDDLGYGS F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MASTSSNRNP NNSAPYDDCE MMKPYEFFFN RFPRGFMFQP SDEELILQYL TNKLLNKPLP  60
TNKVLDLKIY KFTPMQLADM HKFREEEAMY FFSPRDRKYP NGNRPNRITG DGKRTGFWKA  120
TGKDKQIFNE RNKVIGARKA LVFYERDSNY EAEKTDWIMH EFKIHENIIG PTTTTARAPG  180
DNRLDDWVLC KVYLSKMAKP NPNTRDEAEK TEMIDSKPLE QDLPLLESSA TPNLGEQVNM  240
NNQSVQPLNN GIMTVPYGST TGFVSQDVTN LCMRSHADHR QNLSLLPSSS QQQVINSVSS  300
AISSLAGGDN NNGMITTPYG YADHQHNSLM PSVINSVDSA IASLAAGPVL PRGFGAQYGT  360
NIAPPNGIPA YQSYQSHGFG AHPSLPSFEN GCLPPLPQGY YSYDDLGYGS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	7e-41	NAC family protein