PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19512

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 411aa MW: 47454.5 Da PI: 6.2291

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19512	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.2	6.2e-44	24	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppG+rF+Ptd el+ +yLk+kv +++l+l + i+e++iy+++P++L + ++ +e+ wyfFs+r++ky +g+r+nr+++ g Wkatg+d ++++ +g Ro06_G19512 24 LPPGYRFNPTDRELILYYLKRKVLNEPLPL-HRIHEINIYQHHPQELSeMFHRIRENGWYFFSTRKRKYLNGTRPNRSARGGHWKATGRDVKITDDNG 120 79**************************.77**********9445556899************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 e++g kk+L f +g++++ kt+W mheyr+ Ro06_G19512 121 EVIGQKKVLEFNEGTHKEKIKTEWKMHEYRI 151 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MEGNNQEISG MFNQASTDEY FHSLPPGYRF NPTDRELILY YLKRKVLNEP LPLHRIHEIN 60 IYQHHPQELS EMFHRIRENG WYFFSTRKRK YLNGTRPNRS ARGGHWKATG RDVKITDDNG 120 EVIGQKKVLE FNEGTHKEKI KTEWKMHEYR IKDIEKEVIP PPKWKKGEGN MKLDIVLCKI 180 YLNTRGQTDT DSNDAISTPE NSDQGVRVTD LVTSHDKDIS VKHGARQDQP LDSSLMCSQH 240 PQVHNNTTGG FNNMDHKFNS STTLDNCFYS SNSMNNGFCD SHYGGSMKNE AFGSAYQWGS 300 FSNFHNQNYT NYSMYSELMP SSSKSYPSQI PSQCSTEIWT RSEPNYHEMS LMDDSTSVSL 360 PTHVNEYEFM LKAHEKIPIL HVNKDEADDE GLQFLSIPDE VHEDDSKTDL A

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MEGNNQEISG MFNQASTDEY FHSLPPGYRF NPTDRELILY YLKRKVLNEP LPLHRIHEIN  60
IYQHHPQELS EMFHRIRENG WYFFSTRKRK YLNGTRPNRS ARGGHWKATG RDVKITDDNG  120
EVIGQKKVLE FNEGTHKEKI KTEWKMHEYR IKDIEKEVIP PPKWKKGEGN MKLDIVLCKI  180
YLNTRGQTDT DSNDAISTPE NSDQGVRVTD LVTSHDKDIS VKHGARQDQP LDSSLMCSQH  240
PQVHNNTTGG FNNMDHKFNS STTLDNCFYS SNSMNNGFCD SHYGGSMKNE AFGSAYQWGS  300
FSNFHNQNYT NYSMYSELMP SSSKSYPSQI PSQCSTEIWT RSEPNYHEMS LMDDSTSVSL  360
PTHVNEYEFM LKAHEKIPIL HVNKDEADDE GLQFLSIPDE VHEDDSKTDL A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-42	NAC family protein