PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19235

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 342aa MW: 38112.7 Da PI: 8.1236

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19235	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	172	226	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Ro06_G19235 172 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 226 678899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.7e-41	172	262	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Ro06_G19235 172 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 262 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MELALSLGDA PKQFLFLDKT PNMGNKDLGF CMALGSRETR EGYDQDDESS RTRRRVSSDP 60 PIQLNLLPSA PVMRSSSQLR FPWLTDNLAV SEPAGSDEPG KGLDVNRFPV VVGTAEEAED 120 AAATLSSPNS TVSSFQMDFG VRRSRRDLDL EVLETERASS RASDDDENGS TRKKLRLSKD 180 QSAFLEESFK EHSTLNPKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC 240 CETLTEENRR LQKELQELRA LKSSQPFYMQ LPATTLTMCP SCERVVTTAS ANTATTNPTT 300 IKSSSPSSGL TTNNHSRLQS HNPFAQAQAH MQPQVQANKG AA

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MELALSLGDA PKQFLFLDKT PNMGNKDLGF CMALGSRETR EGYDQDDESS RTRRRVSSDP  60
PIQLNLLPSA PVMRSSSQLR FPWLTDNLAV SEPAGSDEPG KGLDVNRFPV VVGTAEEAED  120
AAATLSSPNS TVSSFQMDFG VRRSRRDLDL EVLETERASS RASDDDENGS TRKKLRLSKD  180
QSAFLEESFK EHSTLNPKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LQKELQELRA LKSSQPFYMQ LPATTLTMCP SCERVVTTAS ANTATTNPTT  300
IKSSSPSSGL TTNNHSRLQS HNPFAQAQAH MQPQVQANKG AA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	177	TRKKLRL
2	221	229	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-103	HD-ZIP family protein