PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G19070
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 548aa    MW: 60438.4 Da    PI: 6.573
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G19070genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2522.3e-771435292374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel....ykal.ppsetseknsseelaalkl...fsevsPil 91 
                  ++lL  cA a++ g+l+++q+lL  l+elas +gd+++Rlaa+ ++AL + l++s+s+     ++++ p+ + s   s+e  +++k    f+evsP++
  Ro06_G19070 143 EQLLNPCASAITGGNLTRVQHLLYVLHELASLTGDANHRLAAHGLRALTHYLSSSSSSSapnaSASVgPVVTFS---STEPRFFQKSllkFYEVSPWF 237
                  689*************************************************9944433000022232333333...3333333333467******** PP

         GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgv 174
                   f + +aN+ Il+ ++ e    +++Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp ++iT++++++++                +   rL  fA+++++
  Ro06_G19070 238 AFPNNIANSSILQVLADEpnrtSTLHILDIGVSHGMQWPTLLEALTRRPgGPPPLVKITVIAPSTAEsdqnsetpfsIGPPGDNFSARLLGFAKSMNI 335
                  ****************999888889************************55566********988777877666665556678899************ PP

         GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfd 269
                  ++++n l  + l++l+ +  + +++E+l+V+l+++lh+l  ++++le+ r+++Lk+++++ Pk v+++e+++++  ns ++F+++f++ +ey + ++d
  Ro06_G19070 336 NLQINRLDNQPLQTLNSQVVDASSDETLIVCLQFRLHQLN-HNTPLEE-RNQFLKVLRNMDPKGVILSENNMECscNScGDFATGFSRQVEYLWRFLD 431
                  ******9999*****************************6.7778888.9********************97764354259***************** PP

         GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                  s++a +    + r + Er++++ e+ ++++++g++    +e +ekW er++ +GF    ++e+a +  ++llrk++ ++++rv+ ++g++ l Wk++p
  Ro06_G19070 432 STSAAF----KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWCERMKGVGFVGEVFGEEAIDGGRALLRKYDsNWEMRVDGKDGCAGLWWKGQP 521
                  **8876....7777777777888899999999998....9************************************9999****************** PP

         GRAS 367 LvsvSaWr 374
                  + + S+W+
  Ro06_G19070 522 VSFSSVWK 529
                  *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MTTNEVPQPN PTSEQILDWL EDSVSFFPSF LDDPYHSTEI NGYQWWDETQ DLILANTNSL  60
SDNANIAVAA NPVNSNHQQS PSDSSKKRKS PDGPVSNTSS HIDRKMNPVA PPAKRANGNK  120
KGTGKSTGNN CNNGNSKEGR WAEQLLNPCA SAITGGNLTR VQHLLYVLHE LASLTGDANH  180
RLAAHGLRAL THYLSSSSSS SAPNASASVG PVVTFSSTEP RFFQKSLLKF YEVSPWFAFP  240
NNIANSSILQ VLADEPNRTS TLHILDIGVS HGMQWPTLLE ALTRRPGGPP PLVKITVIAP  300
STAESDQNSE TPFSIGPPGD NFSARLLGFA KSMNINLQIN RLDNQPLQTL NSQVVDASSD  360
ETLIVCLQFR LHQLNHNTPL EERNQFLKVL RNMDPKGVIL SENNMECSCN SCGDFATGFS  420
RQVEYLWRFL DSTSAAFKGR ESEERRVMEG EAAKALTNRG EMNEGKEKWC ERMKGVGFVG  480
EVFGEEAIDG GRALLRKYDS NWEMRVDGKD GCAGLWWKGQ PVSFSSVWKI GYKSTFCTHN  540
NLRNNYGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-160GRAS family protein