PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18927

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 375aa MW: 40209.3 Da PI: 9.2408

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18927	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	139.7	8.1e-44	79	156	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls++k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ Ro06_G18927 79 RCQVEGCNADLSDVKAYYSRHKVCGMHSKTPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 156 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEMGSSSMTD SGGSSSSPPN NSSTETESLN GLKFGRKIYF EDTGPGAPPK SGSGSSSSGA 60 TPPKKQRAGG LANQAQPPRC QVEGCNADLS DVKAYYSRHK VCGMHSKTPT VIVAGLEQRF 120 CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPQPGSML SSRFGRLSSS IYENSSRVGS 180 FLMDFTAYPR AGRDASATAR TSERAPVNQN VTATGKFLQH PWQSNPENAR SDLYMQGSAG 240 GTSYPGPGIP PGECVTGVND SSCALSLLSN QPWDSRNRGV GTNAFINTQG APMAQSIANV 300 GTVNPFPTLS WGFKGNEAGS SSHEMLPDLG LGQISQPLNS HYSGELELSQ QGRRQQNMEL 360 GNSRGYDSSS QHWSL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEMGSSSMTD SGGSSSSPPN NSSTETESLN GLKFGRKIYF EDTGPGAPPK SGSGSSSSGA  60
TPPKKQRAGG LANQAQPPRC QVEGCNADLS DVKAYYSRHK VCGMHSKTPT VIVAGLEQRF  120
CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPQPGSML SSRFGRLSSS IYENSSRVGS  180
FLMDFTAYPR AGRDASATAR TSERAPVNQN VTATGKFLQH PWQSNPENAR SDLYMQGSAG  240
GTSYPGPGIP PGECVTGVND SSCALSLLSN QPWDSRNRGV GTNAFINTQG APMAQSIANV  300
GTVNPFPTLS WGFKGNEAGS SSHEMLPDLG LGQISQPLNS HYSGELELSQ QGRRQQNMEL  360
GNSRGYDSSS QHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	8e-72	SBP family protein