PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18835

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 357aa MW: 41010.4 Da PI: 8.519

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18835	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.3	1.8e-50	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lp+GfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+ +e+ewyfF++rd+ky++g+r+nra+ gyWkatg+dk+++s+ ++ Ro06_G18835 15 LPAGFRFHPSDEELIVHYLKNKVTSSPLPA-TIITELDLYKYNPWELPGKALFGEEEWYFFTPRDRKYPNGTRPNRAAGLGYWKATGTDKHIFSScGT 111 799*************************.89***********7777899***********************************9888 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfy+g+ pkg+kt+W+m+eyrl Ro06_G18835 112 KSIGVKKALVFYTGHPPKGVKTEWIMNEYRL 142 89*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MAEREQTIDK HSIQLPAGFR FHPSDEELIV HYLKNKVTSS PLPATIITEL DLYKYNPWEL 60 PGKALFGEEE WYFFTPRDRK YPNGTRPNRA AGLGYWKATG TDKHIFSSCG TKSIGVKKAL 120 VFYTGHPPKG VKTEWIMNEY RLLDTTIWST SSKQKGSMRL DDWVLCRVRQ KCNNSRNIWE 180 DQNTTPSYKL SGHFRQVDEP CSKEANPSIE MVRSYLYKDC PMLPYIFASQ KVLPSIKTTS 240 SINFQDSTEN RKSCSPTPVY HQVDSNRINN NGGQFLFSSL DSLIINPLKR KPEGTDQQRC 300 SVAPSKKICN REYPKEEVII NGSMNLWGID SQFEADNFNA DQWSSMIQYQ ELSQLIG

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MAEREQTIDK HSIQLPAGFR FHPSDEELIV HYLKNKVTSS PLPATIITEL DLYKYNPWEL  60
PGKALFGEEE WYFFTPRDRK YPNGTRPNRA AGLGYWKATG TDKHIFSSCG TKSIGVKKAL  120
VFYTGHPPKG VKTEWIMNEY RLLDTTIWST SSKQKGSMRL DDWVLCRVRQ KCNNSRNIWE  180
DQNTTPSYKL SGHFRQVDEP CSKEANPSIE MVRSYLYKDC PMLPYIFASQ KVLPSIKTTS  240
SINFQDSTEN RKSCSPTPVY HQVDSNRINN NGGQFLFSSL DSLIINPLKR KPEGTDQQRC  300
SVAPSKKICN REYPKEEVII NGSMNLWGID SQFEADNFNA DQWSSMIQYQ ELSQLIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-78	NAC family protein