PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G18361
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 309aa    MW: 33570.9 Da    PI: 10.634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G18361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18150200256
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr ++ +gr+ AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  Ro06_G18361 150 NYRGVRKRP-WGRFSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 200
                  59*******.**********32....25**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MSFKATETVP FFRKPVAFRS PNTFRLLTEA ASFYESYVST QFSVPPIPVP NQLKLFNPPS  60
HCYFSADIPV SGVNANVSKS KTERSETLPV LDGIAAVVGE HVLFGGKKAS NSESTQISDL  120
VNLPLRFGGA EVPKTAADKK GVGNVSVQKN YRGVRKRPWG RFSAEIRDRI GRCRHWLGTF  180
DTAEEAARAY DSAARRLRGA KAQTNFQIPS VFPLSYDSPS SSSSTTAAET KRKGTRSRDS  240
KAKAARESSA SVVVTSVGQL FSHNPVPRTA VLGNRNPNLE LDLKLGMSFG CRGSSYCQSV  300
SQSVMHGLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-27ERF family protein