PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G17602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 38066.7 Da PI: 6.9363 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.4 | 1.1e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++ Ro06_G17602 16 LPPGFRFHPTDEELISHYLSPKVLDSCFSA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-AKA 111 79*************************999.89***************888999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wvmheyrle Ro06_G17602 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 *****************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence |
MENVSVFINE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SCFSARAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK ALVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKCSGG KKTHISGLVR 180 ESSFGNELRP SLLPPLMDSP PYNNSDTKTT TVGETSQVSC FSDPMEDQKT QDDIIDSFNN 240 SHHISNSNSS HLLASSSSFP FKSSVQNSYF TNQIAPNTGN LQYPDSGLIQ DQSILRLLTE 300 NHAPNMRRSS NYLEGPDVPS YSSAPIEFDS LWNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-117 | NAC family protein |