PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G17587
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 407aa    MW: 44851.2 Da    PI: 4.4117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G17587genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194796255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Ro06_G17587 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                 789******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MARKRKVSEG VEETKSSSEG TMAWDEMVKE ASAAAALGGA ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSPSP SSTPALPSKI  120
TNLLLQRLKA RNNNSSCSAL SAAPLPINHQ QKQYQEAAAE FSETQYTDFL NDPEDYITSN  180
NDNIPEISAS SIDYMTSSFE SCLTEKEENS TAREADQQMY YGNLNEVAET TYSGGDANFV  240
GEGSEEDVEE EEVNGQVGAI DFQFVDDIGS SDYYSPSPFE IAEEIEEAVE PETYADEPSM  300
LRAAMKRMKY ERKFSASLYA FNGIPECLKL KIGSSATGNT RMRGISELQR ACSNKNKEEA  360
PAKQEYEGVI MGKKEEENQQ RSTDIGSSSS SSFSSLSAVN GDGHVYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-16ERF family protein