PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro06_G17302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 471aa MW: 51291.8 Da PI: 6.8726 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 113 | 170 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ + rsYYrCt+++Cpvk++vers+ ++++++++Y g+H+h+k Ro06_G17302 113 EDGYNWRKYGQKLVRGNLYVRSYYRCTHPKCPVKRQVERSH-NGQITDTVYFGQHDHPK 170 8****************************************.***************85 PP | |||||||
2 | WRKY | 80.3 | 2e-25 | 282 | 336 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++pr C+ +gCpvkk+ver+ +d kvv+ tYeg+H+h+ Ro06_G17302 282 VNDGYRWRKYGQKLVKGNPNPR----CSNPGCPVKKHVERAFNDSKVVIATYEGQHDHD 336 58*******************6....********************************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 471 aa Download sequence |
MVSLGKDVTD KVASDKLPKK ENPDSEIHVP HQTPNNGVCP LQSDDKGSAQ SILPYKALQV 60 PDGAVAALQS NQEGSVSSLT SEKALLTPET GAPVFQSGQE GSTSSRVRER PLEDGYNWRK 120 YGQKLVRGNL YVRSYYRCTH PKCPVKRQVE RSHNGQITDT VYFGQHDHPK PQLSVPIAVG 180 FAVSVGEERT EVPLLNSVED KPLEAHGNSS NQIEPVDPLQ HSNVADKEGV QGVLSQSNRT 240 RDGDPDSKRQ KKEKHNGNSI PVDKPTGEPR VVVQTMSEVD IVNDGYRWRK YGQKLVKGNP 300 NPRCSNPGCP VKKHVERAFN DSKVVIATYE GQHDHDMPPS RTVTPNTAAS NVLTAAHNSD 360 SGTKSEGNAV CRAIAACTSP EHEGKPIEQP NGESRTKSRS IGVAASDMVV DSDLCPERKL 420 NDQLNGKACV QEEGDPPDKI VCRANKLQNG ESESNPPEEE NRKPKAEPVQ G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04880.1 | 1e-82 | WRKY family protein |