PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G16960
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 287aa    MW: 32371.1 Da    PI: 6.1736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G16960genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.95.3e-4251422127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                  ppGfrF Pt+eelv++yL kk++g++      ++++i+ +diy+++PwdLp+     ++++ ++w+fF++r++++a+g +++r t++gyWkatg+   
  Ro06_G16960   5 PPGFRFYPTEEELVSFYLPKKLDGSRedlnRVMDRIIPVLDIYEFNPWDLPRnsgdICHEDPEQWFFFIPRQESEARGGKPKRLTTTGYWKATGSPSY 102
                  9************************966643334479999***********546654444667*********************************** PP

          NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                  v+s+    ++ ++glk+t+vfy+grap+g+kt+W m+ey+
  Ro06_G16960 103 VFSSssntNHGAIGLKRTMVFYTGRAPNGTKTEWKMNEYK 142
                  ***966655556***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MEDFPPGFRF YPTEEELVSF YLPKKLDGSR EDLNRVMDRI IPVLDIYEFN PWDLPRNSGD  60
ICHEDPEQWF FFIPRQESEA RGGKPKRLTT TGYWKATGSP SYVFSSSSNT NHGAIGLKRT  120
MVFYTGRAPN GTKTEWKMNE YKAIEANHQL QAPSSSSNTA PAPMLRQEFS LCRVYKKTKC  180
LRAFDRRPTG AGDIIRQHAI TVHLPAAPQV GADDQEASIS HARNIVLAPY TYNVEVERRS  240
FSSPESSSSG DHGQPSRSGQ STGSLPMAVD DGELWELVPL EQLDWFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-66NAC family protein