PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G16333

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 420aa MW: 47304.5 Da PI: 7.7074

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G16333	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.7	3.9e-15	74	133	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Ro06_G16333 74 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 133 789****************888855555447***********************98 PP
2	AP2	52.2	1.5e-16	176	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Ro06_G16333 176 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 227 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MDPQLMMVKN EETPAGRRSL STTDRQGNQA TRCVKRRRRE PAAAAVDNSK SELLLPEKPA 60 DPAASAATTM KRSSRFRGVS RHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA 120 ARAYDLAALK YWGTSTFTNF PISDYEKEIE IMQSVTKEEY LASLRRKSSG FSRGVSKYRG 180 VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSSYI 240 RWLKPKADST IVAQELETAA EPEIMPFMPS NYVPAEESSF SHTNPFASNY LNSPRKQEVS 300 HSNIPLNTSS KSSSPTALGL LLQSSIFREL VQKNSNFSED ESTDGEEQKN QAQGGSDDEY 360 GGVFYDGIGV NSPFVCSSNR DSIELQEREL LHSPWNSFAS TMLLNQTTKA DTSESLFFFS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MDPQLMMVKN EETPAGRRSL STTDRQGNQA TRCVKRRRRE PAAAAVDNSK SELLLPEKPA  60
DPAASAATTM KRSSRFRGVS RHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA  120
ARAYDLAALK YWGTSTFTNF PISDYEKEIE IMQSVTKEEY LASLRRKSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSSYI  240
RWLKPKADST IVAQELETAA EPEIMPFMPS NYVPAEESSF SHTNPFASNY LNSPRKQEVS  300
HSNIPLNTSS KSSSPTALGL LLQSSIFREL VQKNSNFSED ESTDGEEQKN QAQGGSDDEY  360
GGVFYDGIGV NSPFVCSSNR DSIELQEREL LHSPWNSFAS TMLLNQTTKA DTSESLFFFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	8e-96	AP2 family protein