PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G16328

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 542aa MW: 59132 Da PI: 6.397

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G16328	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.6e-30	214	272	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+ +d +++++tYeg+Hnh+ Ro06_G16328 214 NDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCIDDMSILITTYEGTHNHP 272 8*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MPNSNSTAAA AAAEKKVESF GYQEGHSEKE NDELVDAKAE MSEVREENAR LKKTLEHMMK 60 DYQSLQLRFF DILRQESHSK KATNPSPTMG ATTSHIEIEE PHDQLLSLCL GRSPRDPILI 120 NDESKLVQVD HHQDLKANLT LGLGSKLQLP TELVLSGPIL ENSSEEPKES EVSPSNTKTP 180 KTMRNEDDEA LQQANAAKRA RVSVRARCDT PTLNDGCQWR KYGQKIAKGN PCPRAYYRCT 240 VAPACPVRKQ VQRCIDDMSI LITTYEGTHN HPLPMTATSM ASTTSAAASM LLSGSSTSQL 300 PGLGSSHGLD FGLLDSSRPQ QLYMPKLSSS PLFPTVTLDL TSSPSSSTTQ YSTFPSSLSF 360 CSSESNINLP SSWGNGYPKF GTLHPFDKTN QEYFQPNHQA SSQVSLTETL TKAITSDPNF 420 KSVIAVALSS MAGGGAATYG SQGIGERLGQ HLTQNGKGCA SSIFNSMSSS DSQKENLMLL 480 QPPPDSKSTT STPAIRDKNV ILSNRQYELD SAESHSNDYR ANKWLIIYGL KGFLLYASED 540 ES

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MPNSNSTAAA AAAEKKVESF GYQEGHSEKE NDELVDAKAE MSEVREENAR LKKTLEHMMK  60
DYQSLQLRFF DILRQESHSK KATNPSPTMG ATTSHIEIEE PHDQLLSLCL GRSPRDPILI  120
NDESKLVQVD HHQDLKANLT LGLGSKLQLP TELVLSGPIL ENSSEEPKES EVSPSNTKTP  180
KTMRNEDDEA LQQANAAKRA RVSVRARCDT PTLNDGCQWR KYGQKIAKGN PCPRAYYRCT  240
VAPACPVRKQ VQRCIDDMSI LITTYEGTHN HPLPMTATSM ASTTSAAASM LLSGSSTSQL  300
PGLGSSHGLD FGLLDSSRPQ QLYMPKLSSS PLFPTVTLDL TSSPSSSTTQ YSTFPSSLSF  360
CSSESNINLP SSWGNGYPKF GTLHPFDKTN QEYFQPNHQA SSQVSLTETL TKAITSDPNF  420
KSVIAVALSS MAGGGAATYG SQGIGERLGQ HLTQNGKGCA SSIFNSMSSS DSQKENLMLL  480
QPPPDSKSTT STPAIRDKNV ILSNRQYELD SAESHSNDYR ANKWLIIYGL KGFLLYASED  540
ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-56	WRKY family protein