PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G16323

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 324aa MW: 36380.2 Da PI: 6.8574

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G16323	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.4e-18	98	150	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe+ +++ e++ +L+k lgL+ rqV +WFqNrRa++k Ro06_G16323 98 KKRLNLEQVKTLEKSFEMGNKLEPERKLQLSKALGLQPRQVAIWFQNRRARWK 150 4568889*********************************************9 PP
2	HD-ZIP_I/II	127.6	5.3e-41	96	186	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe+ +kLeperK +l+++Lglqprqva+WFqnrRAR+ktkqlEkdye+Lk+++d+lk++n++L++++++L++el Ro06_G16323 96 EKKKRLNLEQVKTLEKSFEMGNKLEPERKLQLSKALGLQPRQVAIWFQNRRARWKTKQLEKDYEVLKKKFDSLKADNDALQAHNKKLQAEL 186 69**************************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MAFPPCHSFM FQTHEDPDLH LSASSSLNNL PSCPPQHFHG GGGGGVPFMM KRSLSFSGVD 60 DKCSHQHQHH HYDHQDLHGG GDQDDLSDDG SQLIGEKKKR LNLEQVKTLE KSFEMGNKLE 120 PERKLQLSKA LGLQPRQVAI WFQNRRARWK TKQLEKDYEV LKKKFDSLKA DNDALQAHNK 180 KLQAELLAVK GSKDSNFEGS LNNNLKKETD QGSWSNGSTD DNSSDHINLD MSTSTTPAAN 240 SPQSNSQITN GSKNLFPSSL CRPPHSSITQ LLQGSSRSDL HCLKVDQMIQ DDQSFCTMFN 300 NGSIDQDHQG SFWPWPAEQQ HHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	3e-65	HD-ZIP family protein