PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15714

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 1202aa MW: 135292 Da PI: 8.402

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15714	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35	2.5e-11	7	57	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle+Le+++++++yp+++++e A+ gLt +qV+ WF rR +ek+ Ro06_G15714 7 KTRLQLEALESFYAEEKYPTRTAMECHATVFGLTYKQVRGWFVERRRREKR 57 5889**********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1202 aa Download sequence
MDKAQKKTRL QLEALESFYA EEKYPTRTAM ECHATVFGLT YKQVRGWFVE RRRREKRKNI 60 ASELLSGRNG LGIAATRVAK LIPSSHRTKA PSSLKSKKKK MKPNHIQELQ NPDYLLKRVF 120 RKDGPPLGVE FDSLPSRALW HSTDAQIDPP TCKENQIAPE RGTVTKCAVT SHEEFNSSAP 180 VKRHGAGKDL MTMRKHGGGK DLMTVKKHGG GKNLMTMKKH GGGKDLMAMK KHGGGKGLMT 240 VWRATNPDAD ARDFLVDMGL ANGEVARVSR KPQMRSRRLQ QQKTVPVSII LRSILVVAFG 300 RFSDSMLPIQ KQGRLQSKLQ EKRKRFVKRR EVESNKHSNQ KLPSKEKCEL ALVGTGSQVH 360 LDKIAMLVDD EELELRELQA RPNSLGCSNH FTTNGDHGCS LCKDSLVKFP PSSVKMKQPF 420 HMQPWDSSPE IAKKLFKVFH FLYTYAVMVD LCSFTLDEFA QAFHDKDSSL LGKIHVALLK 480 LLLSNVQAEL SCGSVSHLSK SCNFLAFIHS VENQDSTLEF WDKSLNPLTW TEILRQVLVA 540 AGFGSKQGAM RREALSKEMS LMVKYGLRSG TLKGELFRVL LEQGINGLKV SELAKSLQIA 600 ELNVSSRIDD LESLICSTLS SDITLFEKIS SSTYRVRINS SEDEVEELQS DTEDSGAVDD 660 DLSDSGICSS DDDSGCNSGN SNIRKLTYMN RCRSTNNMLK VHTEIDESHP GEVWLLGLME 720 GEYSDLSIEE KLNAMVALID LLHAGSNMRM KDPAYAECIP NSLHSGSGAK IKRLSARQHR 780 VPRPSWVHAG NMDGVNEDHT CSKFHPIESS ASISKFYEER YSTKGKDCGS DLHPMQSVFL 840 GSDRRYNRYW LFLGPCNGYD PGHRRVYFES SEDGHWEVID TKEALCALLS VLDDRGKREA 900 LLIESLEIRL TVLCQAMSNR TASGDGSEHL TQSDRSELDN VREDTYSPVS DVDNNSSETA 960 SDSVPLCGTV VPEVRKKGEE LKQKWRRIQA FDSWLWNSFY LDLNSVKHGK RSYFDTLTRC 1020 ESCHDLYWRD EKHCRICHTT FELHFDLEEM FAIHVATCRE KETGDTFPEH KVLSSQIQSL 1080 KAAIHAIESV MPEDALLGAW KKSAHKLWVK RLRRTSSLSE LLQVLTDFVG AINEDWLYKC 1140 EIVQGSCKVG EEIVASFASM PHTTSAVALW LVKLDALIAP YVKRACSERR QEACIRGKHS 1200 KQ

Sequence ? help Back to Top

Protein Sequence Length: 1202 aa Download sequence

MDKAQKKTRL QLEALESFYA EEKYPTRTAM ECHATVFGLT YKQVRGWFVE RRRREKRKNI  60
ASELLSGRNG LGIAATRVAK LIPSSHRTKA PSSLKSKKKK MKPNHIQELQ NPDYLLKRVF  120
RKDGPPLGVE FDSLPSRALW HSTDAQIDPP TCKENQIAPE RGTVTKCAVT SHEEFNSSAP  180
VKRHGAGKDL MTMRKHGGGK DLMTVKKHGG GKNLMTMKKH GGGKDLMAMK KHGGGKGLMT  240
VWRATNPDAD ARDFLVDMGL ANGEVARVSR KPQMRSRRLQ QQKTVPVSII LRSILVVAFG  300
RFSDSMLPIQ KQGRLQSKLQ EKRKRFVKRR EVESNKHSNQ KLPSKEKCEL ALVGTGSQVH  360
LDKIAMLVDD EELELRELQA RPNSLGCSNH FTTNGDHGCS LCKDSLVKFP PSSVKMKQPF  420
HMQPWDSSPE IAKKLFKVFH FLYTYAVMVD LCSFTLDEFA QAFHDKDSSL LGKIHVALLK  480
LLLSNVQAEL SCGSVSHLSK SCNFLAFIHS VENQDSTLEF WDKSLNPLTW TEILRQVLVA  540
AGFGSKQGAM RREALSKEMS LMVKYGLRSG TLKGELFRVL LEQGINGLKV SELAKSLQIA  600
ELNVSSRIDD LESLICSTLS SDITLFEKIS SSTYRVRINS SEDEVEELQS DTEDSGAVDD  660
DLSDSGICSS DDDSGCNSGN SNIRKLTYMN RCRSTNNMLK VHTEIDESHP GEVWLLGLME  720
GEYSDLSIEE KLNAMVALID LLHAGSNMRM KDPAYAECIP NSLHSGSGAK IKRLSARQHR  780
VPRPSWVHAG NMDGVNEDHT CSKFHPIESS ASISKFYEER YSTKGKDCGS DLHPMQSVFL  840
GSDRRYNRYW LFLGPCNGYD PGHRRVYFES SEDGHWEVID TKEALCALLS VLDDRGKREA  900
LLIESLEIRL TVLCQAMSNR TASGDGSEHL TQSDRSELDN VREDTYSPVS DVDNNSSETA  960
SDSVPLCGTV VPEVRKKGEE LKQKWRRIQA FDSWLWNSFY LDLNSVKHGK RSYFDTLTRC  1020
ESCHDLYWRD EKHCRICHTT FELHFDLEEM FAIHVATCRE KETGDTFPEH KVLSSQIQSL  1080
KAAIHAIESV MPEDALLGAW KKSAHKLWVK RLRRTSSLSE LLQVLTDFVG AINEDWLYKC  1140
EIVQGSCKVG EEIVASFASM PHTTSAVALW LVKLDALIAP YVKRACSERR QEACIRGKHS  1200
KQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	ERRRRE
2	51	56	RRRREK
3	52	58	RRREKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	HB-other family protein