PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15699

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 476aa MW: 52471.6 Da PI: 5.1733

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15699	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.2e-33	250	304	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl Ro06_G15699 250 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKVMNVEGLTIYHVKSHLQKYRL 304 59****************************************************8 PP
2	Myb_DNA-binding	53.7	4.6e-17	252	303	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++v+av++l g t+k + + m+ +g+t +++ks++qky+ Ro06_G15699 252 RMRWTPELHERFVEAVNKLDGAekaTPKGVLKVMNvEGLTIYHVKSHLQKYR 303 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MNSIESVLFD LENLSNLERY MRLLPCWVNH PMDSSQAVGC NEGRSLAARE CSSTRLSPFI 60 RTESLSSPTI MRESSLQHFK STFSRSSVFC TSLYQSSSSS SETSRQLGNL PFLPHPPTYS 120 QSISTVDSKS PLLLIEDVSN QYDDEQSEYL MKDFLNLTGD ASDGSFHGIG CGTDTIALTE 180 QLEFQFLTDQ LDIAITDNGE NPRLDEIYEI PQASSKPAVE LTCSKSCGST APPVDALASH 240 PSPGPSSAHR PRMRWTPELH ERFVEAVNKL DGAEKATPKG VLKVMNVEGL TIYHVKSHLQ 300 KYRLAKYMPE KKEDKKASSS EEKKAASSSN ESDGRRKGSI HITEALRMQM EVQKQLHEQL 360 EVQRTLQLRI EEHAKYLEKI LEEQQKAGSA LLSPQALSSL TAIPIKDSEQ QPSPSAGVSP 420 SQPAESDSSS PLLLKHKATD SGDSEAQACT KKLRIEEKPD EPVVENPPAT VTSTTD

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MNSIESVLFD LENLSNLERY MRLLPCWVNH PMDSSQAVGC NEGRSLAARE CSSTRLSPFI  60
RTESLSSPTI MRESSLQHFK STFSRSSVFC TSLYQSSSSS SETSRQLGNL PFLPHPPTYS  120
QSISTVDSKS PLLLIEDVSN QYDDEQSEYL MKDFLNLTGD ASDGSFHGIG CGTDTIALTE  180
QLEFQFLTDQ LDIAITDNGE NPRLDEIYEI PQASSKPAVE LTCSKSCGST APPVDALASH  240
PSPGPSSAHR PRMRWTPELH ERFVEAVNKL DGAEKATPKG VLKVMNVEGL TIYHVKSHLQ  300
KYRLAKYMPE KKEDKKASSS EEKKAASSSN ESDGRRKGSI HITEALRMQM EVQKQLHEQL  360
EVQRTLQLRI EEHAKYLEKI LEEQQKAGSA LLSPQALSSL TAIPIKDSEQ QPSPSAGVSP  420
SQPAESDSSS PLLLKHKATD SGDSEAQACT KKLRIEEKPD EPVVENPPAT VTSTTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.1	1e-115	G2-like family protein