PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15511

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 272aa MW: 30103.8 Da PI: 10.0184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+ H Ro06_G15511 35 YTCRLCSRAFPTTQALGGHQTAH 57 9***************9999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MSMTSAEILT NQNMEDPLIP ASMSWSSESS SLDLYTCRLC SRAFPTTQAL GGHQTAHRKE 60 KIERLIRIQR QAEIDELKYA ADNDLLLSPE PISWAPPATD DQTLKVSNFM PMGNGTSPVP 120 GSGLESVQGL GVGSSGCSEN KASDDSDQKK HKKRKSAAKL SECLENKASG DSDQKKQKKR 180 KSAAKLSECS ENKASDDSDQ KKQKKRKTIK LSECLENMAS DADQKKQKKR KTTKFSEFSE 240 INKASDADKK KQKKRKSTKS NFDPKYSNAN KS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	181	KKRKSAAKLSECLENKASGDSDQKKQKKRK
2	178	207	KKRKSAAKLSECLENKASGDSDQKKQKKRK
3	204	233	KKRKSAAKLSECLENKASGDSDQKKQKKRK
4	204	229	KKRKTIKLSECLENMASDADQKKQKK
5	228	257	KKRKSAAKLSECLENKASGDSDQKKQKKRK
6	228	253	KKRKTIKLSECLENMASDADQKKQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	2e-08	C2H2 family protein