PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15281

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 515aa MW: 57284.9 Da PI: 10.1054

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E +++++a +++G++ Wk++a+ + +R +++ Ro06_G15281 46 QWSKGELQRFYEAYRKYGKD-WKKVAAVVR-NRNIEMV 81 6***************99.******9.9988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MVQFGFSMAP TRKAKSVKRY SNLNEASPGG KNKQRKRNWS DQSGPQWSKG ELQRFYEAYR 60 KYGKDWKKVA AVVRNRNIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSES 120 ERESNDALGY SCKPQKRKLG KDSVSKDMFQ SHSIASVGGC LSYLKKRRLD GNQPRAVGKR 180 TPRFPVQYSS KKDDRENYAS PIRKGRKSEV ENDDEVAHVA ALLTEASQRG GSPQVSQTPY 240 RRSSVQSSQR MHPPSGKARA NLRDASMDDD WLEGSIGSRG AETGDYARDS SSLMDMEGVG 300 TVEINRKGKK FYGKKEKVKN IGNHQFDDGG EACSGTEEGI NVSTKGKVDI EVSNAKGDRF 360 SSQVQRKRSK KLYFGDDSAE LDALQTLADL SLMMPASTME SGSSMQLKDE RTTSEMEEKS 420 NIPESTSTSQ FRNKNKLQGG KQREPFAVSR TEGTNAKKSK LARDSTPIDI NVVSESEQLH 480 STSKLWKRKR KSSVSKISNA EANIDTTVNE PSNSE

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MVQFGFSMAP TRKAKSVKRY SNLNEASPGG KNKQRKRNWS DQSGPQWSKG ELQRFYEAYR  60
KYGKDWKKVA AVVRNRNIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSES  120
ERESNDALGY SCKPQKRKLG KDSVSKDMFQ SHSIASVGGC LSYLKKRRLD GNQPRAVGKR  180
TPRFPVQYSS KKDDRENYAS PIRKGRKSEV ENDDEVAHVA ALLTEASQRG GSPQVSQTPY  240
RRSSVQSSQR MHPPSGKARA NLRDASMDDD WLEGSIGSRG AETGDYARDS SSLMDMEGVG  300
TVEINRKGKK FYGKKEKVKN IGNHQFDDGG EACSGTEEGI NVSTKGKVDI EVSNAKGDRF  360
SSQVQRKRSK KLYFGDDSAE LDALQTLADL SLMMPASTME SGSSMQLKDE RTTSEMEEKS  420
NIPESTSTSQ FRNKNKLQGG KQREPFAVSR TEGTNAKKSK LARDSTPIDI NVVSESEQLH  480
STSKLWKRKR KSSVSKISNA EANIDTTVNE PSNSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	9e-85	MYB_related family protein