PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15220

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 594aa MW: 65413.5 Da PI: 7.4787

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15220	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.1	2e-17	141	227	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a+ ++ ++l+rg+l++ +Weev+ + r++ ++s +qCk+k +nl+kryk +++++ + +s s++p+f+++e Ro06_G15220 141 EWSDGAIACLLDAYMDKFTQLNRGNLRGRDWEEVAVIVseRSERQTKSVEQCKNKVDNLKKRYKLERHRMTNC-GNSPSHWPWFKRME 227 5***********************************655566689********************96.677889*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MASCDDDFSI LGSNDSNPNH RLPHAPPNTH RIPQPYAPPH RFATTRTAPV NAQPILAVSS 60 ADKVNAGEDQ DDGEDYGDAA AFCSNAFDSG TDQNDVAGKR KDQSDELSDG AGGGGGGASY 120 SQRRSKPSVA TAGEYRKDRE EWSDGAIACL LDAYMDKFTQ LNRGNLRGRD WEEVAVIVSE 180 RSERQTKSVE QCKNKVDNLK KRYKLERHRM TNCGNSPSHW PWFKRMEQIV GNSLPTKANS 240 DDDRGVASSG ATPQKSKRNA NAITSPATQM NKQPKISLKW RRVVFKISGA ALAGTAANNI 300 DPKLTMLIAR EVALACRSGV EVAIVVGGRN FFCGNTWVNE TGLDRSTAYQ TGMMTTIMNS 360 ILLQSAFEKM GILTRVQSAF SMPELAEPYN RQRAIRHLEK GRVVIFAGIG AGTGNPLFTT 420 DTAAALRASE IHAEAVLKGT NVDGVYDRNS QDNNFTFQHI SFRELVTRGE HNMDTMALTL 480 CEDNRIPVVI FNLLEPGNIS KALRGEQVGT LIDQVVRVFF ILFCKWYEVG DDITWRKIVD 540 ADEDSFFTVL SSLMHENCQS RLVSNAAVEY PVYSCRMKNG VIRPLAPVRS QDLG

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MASCDDDFSI LGSNDSNPNH RLPHAPPNTH RIPQPYAPPH RFATTRTAPV NAQPILAVSS  60
ADKVNAGEDQ DDGEDYGDAA AFCSNAFDSG TDQNDVAGKR KDQSDELSDG AGGGGGGASY  120
SQRRSKPSVA TAGEYRKDRE EWSDGAIACL LDAYMDKFTQ LNRGNLRGRD WEEVAVIVSE  180
RSERQTKSVE QCKNKVDNLK KRYKLERHRM TNCGNSPSHW PWFKRMEQIV GNSLPTKANS  240
DDDRGVASSG ATPQKSKRNA NAITSPATQM NKQPKISLKW RRVVFKISGA ALAGTAANNI  300
DPKLTMLIAR EVALACRSGV EVAIVVGGRN FFCGNTWVNE TGLDRSTAYQ TGMMTTIMNS  360
ILLQSAFEKM GILTRVQSAF SMPELAEPYN RQRAIRHLEK GRVVIFAGIG AGTGNPLFTT  420
DTAAALRASE IHAEAVLKGT NVDGVYDRNS QDNNFTFQHI SFRELVTRGE HNMDTMALTL  480
CEDNRIPVVI FNLLEPGNIS KALRGEQVGT LIDQVVRVFF ILFCKWYEVG DDITWRKIVD  540
ADEDSFFTVL SSLMHENCQS RLVSNAAVEY PVYSCRMKNG VIRPLAPVRS QDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein