PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15218

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 483aa MW: 54905.9 Da PI: 6.3767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15218	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.2	4.5e-23	107	207	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+ +v++Li a+ +++++ ++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++ Ro06_G15218 107 KWTDTMVRLLIMAVFYIGDEGVSEGpdptgkkkngggllQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQGLLE 204 7************998877654335666678899999********************************************5599999999999 PP trihelix 84 qle 86 +++ Ro06_G15218 205 KMD 207 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MESNNGVGGG LFSGMLGLEM PLHPTQNPQN PQNPYHHHMH QSQMVSYAHH ETDHNHHQQA 60 QQSVKHGYPY ATKPKQINLS DEDEPGFGAD DSNGDNKRKI SPWQRMKWTD TMVRLLIMAV 120 FYIGDEGVSE GPDPTGKKKN GGGLLQKKGK WKSVSRAMME KGFFVSPQQC EDKFNDLNKR 180 YKRVNDILGK GTACKVVENQ GLLEKMDLSS KMKEEVRKLL NSKHLFFREM CAYHNSCGHG 240 TVGVAGASGV HNSSPEMATD PSEVQLQQPQ QQRCFHSSEN AHVVGNSGRA ETEASKMLKA 300 ESGGEDEDED DYEDGDDSED DEVDEEEGVV EGGLRGQNGH GHEDEDDNDH EKAKRPRKGG 360 SSSKMLMQQL SSELMGVIQD VSKSPWEKKQ WMKTRLIQLE EQQVSYQYQS FELEKQRLKW 420 VRYSGKKERD MERAKLENER RRLENERMVL LVRQKELELL DLHHHHQQQN SSNKRSDPSS 480 LSG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MESNNGVGGG LFSGMLGLEM PLHPTQNPQN PQNPYHHHMH QSQMVSYAHH ETDHNHHQQA  60
QQSVKHGYPY ATKPKQINLS DEDEPGFGAD DSNGDNKRKI SPWQRMKWTD TMVRLLIMAV  120
FYIGDEGVSE GPDPTGKKKN GGGLLQKKGK WKSVSRAMME KGFFVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACKVVENQ GLLEKMDLSS KMKEEVRKLL NSKHLFFREM CAYHNSCGHG  240
TVGVAGASGV HNSSPEMATD PSEVQLQQPQ QQRCFHSSEN AHVVGNSGRA ETEASKMLKA  300
ESGGEDEDED DYEDGDDSED DEVDEEEGVV EGGLRGQNGH GHEDEDDNDH EKAKRPRKGG  360
SSSKMLMQQL SSELMGVIQD VSKSPWEKKQ WMKTRLIQLE EQQVSYQYQS FELEKQRLKW  420
VRYSGKKERD MERAKLENER RRLENERMVL LVRQKELELL DLHHHHQQQN SSNKRSDPSS  480
LSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-74	Trihelix family protein